RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 PKNOX2Q96KN3 472 aa17.4■□□□□ 0.38
UBE3D-201ENST00000237186 WNT8AQ9H1J5 351 aa17.4■□□□□ 0.38
UBE3D-201ENST00000237186 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.4■□□□□ 0.38
UBE3D-201ENST00000237186 GGA3Q9NZ52 723 aa17.4■□□□□ 0.38
UBE3D-201ENST00000237186 UVRAGQ9P2Y5 699 aa17.4■□□□□ 0.38
UBE3D-201ENST00000237186 NR2E1Q9Y466 385 aa17.4■□□□□ 0.38
UBE3D-201ENST00000237186 SSC5DA1L4H1 1573 aa17.4■□□□□ 0.38
UBE3D-201ENST00000237186 GOLGA6L10A0A0M3HER8 536 aa17.39■□□□□ 0.38
UBE3D-201ENST00000237186 MMEP08473 750 aa17.39■□□□□ 0.38
UBE3D-201ENST00000237186 PDE6CP51160 858 aa17.39■□□□□ 0.38
UBE3D-201ENST00000237186 HIRAP54198 1017 aaPredicted RBP17.39■□□□□ 0.38
UBE3D-201ENST00000237186 HLTFQ14527 1009 aaKnown RBP eCLIP17.39■□□□□ 0.38
UBE3D-201ENST00000237186 PSMD6Q15008 389 aa17.39■□□□□ 0.38
UBE3D-201ENST00000237186 LBX2Q6XYB7 198 aa17.39■□□□□ 0.38
UBE3D-201ENST00000237186 PSPC1Q8WXF1 523 aaKnown RBP17.39■□□□□ 0.38
UBE3D-201ENST00000237186 ZSWIM1Q9BR11 485 aa17.39■□□□□ 0.38
UBE3D-201ENST00000237186 PORCNQ9H237 461 aa17.39■□□□□ 0.38
UBE3D-201ENST00000237186 DHX33Q9H6R0 707 aaKnown RBP17.39■□□□□ 0.38
UBE3D-201ENST00000237186 TOPORSQ9NS56 1045 aaPredicted RBP17.39■□□□□ 0.38
UBE3D-201ENST00000237186 UTP11Q9Y3A2 253 aaKnown RBP17.39■□□□□ 0.38
UBE3D-201ENST00000237186 SYNGAP1Q96PV0 1343 aa17.39■□□□□ 0.37
UBE3D-201ENST00000237186 FAM187AA6NFU0 413 aa17.39■□□□□ 0.37
UBE3D-201ENST00000237186 TTI1O43156 1089 aa17.39■□□□□ 0.37
UBE3D-201ENST00000237186 USP2O75604 605 aaPredicted RBP17.39■□□□□ 0.37
UBE3D-201ENST00000237186 GGPS1O95749 300 aa17.39■□□□□ 0.37
UBE3D-201ENST00000237186 DRG2P55039 364 aaKnown RBP17.39■□□□□ 0.37
UBE3D-201ENST00000237186 EMC2Q15006 297 aa17.39■□□□□ 0.37
UBE3D-201ENST00000237186 CEP89Q96ST8 783 aa17.39■□□□□ 0.37
UBE3D-201ENST00000237186 NIFKQ9BYG3 293 aaKnown RBP17.39■□□□□ 0.37
UBE3D-201ENST00000237186 ZNF302Q9NR11 478 aa17.39■□□□□ 0.37
UBE3D-201ENST00000237186 OATP04181 439 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 ARL2P36404 184 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 NAMPTP43490 491 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 DHX34Q14147 1143 aaKnown RBP17.38■□□□□ 0.37
UBE3D-201ENST00000237186 MTERF2Q49AM1 385 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 ACAD10Q6JQN1 1059 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 ZNF677Q86XU0 584 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 EFCAB13Q8IY85 973 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 ZNF516Q92618 1163 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 TATDN2Q93075 761 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 FAM213AQ9BRX8 229 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 RAB17Q9H0T7 212 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 NEUROG2Q9H2A3 272 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 ACP6Q9NPH0 428 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 FBXO40Q9UH90 709 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 TRPC6Q9Y210 931 aa17.38■□□□□ 0.37
UBE3D-201ENST00000237186 H0YGN5 161 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 DAPK3O43293 454 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 KRT14P02533 472 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 C4BPAP04003 597 aaKnown RBP17.37■□□□□ 0.37
UBE3D-201ENST00000237186 DLATP10515 647 aaKnown RBP17.37■□□□□ 0.37
UBE3D-201ENST00000237186 COMTP21964 271 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 EDNRBP24530 442 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 CTNNA2P26232 953 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 LIG4P49917 911 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 POLGP54098 1239 aaPredicted RBP17.37■□□□□ 0.37
UBE3D-201ENST00000237186 SP4Q02446 784 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 MTMR3Q13615 1198 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 ZACNQ401N2 412 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 SPDYCQ5MJ68 293 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 DUPD1Q68J44 220 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 SLFN12LQ6IEE8 588 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 CYFIP1Q7L576 1253 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 DDX42Q86XP3 938 aaKnown RBP eCLIP17.37■□□□□ 0.37
UBE3D-201ENST00000237186 RIOX2Q8IUF8 465 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 DHX38Q92620 1227 aaKnown RBP17.37■□□□□ 0.37
UBE3D-201ENST00000237186 BICD1Q96G01 975 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 NFS1Q9Y697 457 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 HSD17B3P37058 310 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 IRAK1P51617 712 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 ZNF564Q8TBZ8 553 aaPredicted RBP17.37■□□□□ 0.37
UBE3D-201ENST00000237186 KRT35Q92764 455 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 ERP44Q9BS26 406 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 CAPS2Q9BXY5 557 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 CELF4Q9BZC1 486 aaKnown RBP17.37■□□□□ 0.37
UBE3D-201ENST00000237186 PCDHA3Q9Y5H8 950 aa17.37■□□□□ 0.37
UBE3D-201ENST00000237186 LDHAP00338 332 aaKnown RBP17.36■□□□□ 0.37
UBE3D-201ENST00000237186 GLRA2P23416 452 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 CHRNA3P32297 505 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 CTNNA1P35221 906 aaKnown RBP17.36■□□□□ 0.37
UBE3D-201ENST00000237186 DR1Q01658 176 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 STRN3Q13033 797 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 ZNF211Q13398 564 aaPredicted RBP17.36■□□□□ 0.37
UBE3D-201ENST00000237186 MESDQ14696 234 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 UAP1Q16222 522 aaPredicted RBP17.36■□□□□ 0.37
UBE3D-201ENST00000237186 CLEC16AQ2KHT3 1053 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 ANKRD35Q8N283 1001 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 ZNF526Q8TF50 670 aaPredicted RBP17.36■□□□□ 0.37
UBE3D-201ENST00000237186 ATP8B4Q8TF62 1192 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 NUP85Q9BW27 656 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 ERVK-5Q9HDB9 667 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 PCYOX1Q9UHG3 505 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 PLAAQ9Y263 795 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 SNCAIPQ9Y6H5 919 aa17.36■□□□□ 0.37
UBE3D-201ENST00000237186 HMGB1P1B2RPK0 211 aaPredicted RBP17.35■□□□□ 0.37
UBE3D-201ENST00000237186 PHF2O75151 1096 aa17.35■□□□□ 0.37
UBE3D-201ENST00000237186 PPFIA4O75335 1185 aa17.35■□□□□ 0.37
UBE3D-201ENST00000237186 UNGP13051 313 aaPredicted RBP17.35■□□□□ 0.37
UBE3D-201ENST00000237186 RFC5P40937 340 aa17.35■□□□□ 0.37
UBE3D-201ENST00000237186 ALDH5A1P51649 535 aaPredicted RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms