RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TIPINQ9BVW5 301 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 OVOS2A0A0G2JMS6 1433 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 WDR47O94967 919 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 MBD4O95243 580 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ALADP13716 330 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ACAT1P24752 427 aaKnown RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 SLCO1A2P46721 670 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 RBM5P52756 815 aaKnown RBP eCLIP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 NAALADL2Q58DX5 795 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 RUNDC3AQ59EK9 446 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 EFHC1Q5JVL4 640 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 HP1BP3Q5SSJ5 553 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 MTHFD1LQ6UB35 978 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 TP53INP1Q96A56 240 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ANKARQ7Z5J8 1434 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 SNRPFP62306 86 aaKnown RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 EDRF1Q3B7T1 1238 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 SENP3Q9H4L4 574 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 GIN1Q9NXP7 522 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 TUBGCP4Q9UGJ1 667 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 FAM153AQ9UHL3 310 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ADAM30Q9UKF2 790 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 ADGRA2Q96PE1 1338 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 CFAP65Q6ZU64 1925 aaKnown RBP4.94□□□□□ -1.62
SCN1A-220ENST00000641603 FAM9CQ8IZT9 166 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 SVOPQ8N4V2 548 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 OMA1Q96E52 524 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 RPS6KC1Q96S38 1066 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 TMOD3Q9NYL9 352 aa4.94□□□□□ -1.62
SCN1A-220ENST00000641603 SH2B2O14492 632 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TMEM253P0C7T8 217 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 ATF3P18847 181 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 NCF2P19878 526 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 FNIP1Q8TF40 1166 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 DIS3LQ8TF46 1054 aaKnown RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 XAGE3Q8WTP9 111 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 DCLK3Q9C098 648 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 PIH1D3Q9NQM4 214 aaKnown RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 GDF3Q9NR23 364 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 ZNF446Q9NWS9 450 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 SCN3BQ9NY72 215 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 C6orf203Q9P0P8 240 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 AK5Q9Y6K8 562 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TYW5A2RUC4 315 aaKnown RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 LRRC53A6NM62 1247 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 SCUBE1Q8IWY4 988 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 DCAF5Q96JK2 942 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 GCNT3O95395 438 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 KRT1P04264 644 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 UBTFL6P0CB48 400 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TRIM49P0CI25 452 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TRIM49CP0CI26 452 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 USPL1Q5W0Q7 1092 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 BLZF1Q9H2G9 400 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 GCNT4Q9P109 453 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 KIAA0391O15091 583 aaKnown RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 RHOBTB3O94955 611 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 GCKRQ14397 625 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 ALX1Q15699 326 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TIMM50Q3ZCQ8 353 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 ARMC3Q5W041 872 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 FOXR2Q6PJQ5 311 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 PI4K2BQ8TCG2 481 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 EHD1Q9H4M9 534 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 BCL10O95999 233 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 PAEPP09466 180 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 HSD17B3P37058 310 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 IL12RB1P42701 662 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 CYP27A1Q02318 531 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 CBX3Q13185 183 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 SURF1Q15526 300 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 IZUMO2Q6UXV1 221 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 LPCAT2Q7L5N7 544 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TTC30BQ8N4P2 665 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 PNPT1Q8TCS8 783 aaKnown RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 COX4I2Q96KJ9 171 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 ASPSCR1Q9BZE9 553 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 GALNT8Q9NY28 637 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TOM1L1O75674 476 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 ACSL3O95573 720 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 KCNA2P16389 499 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 HOXC8P31273 242 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 HK2P52789 917 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 UGP2Q16851 508 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 CCDC137Q6PK04 289 aaKnown RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 FBXL16Q8N461 479 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 MTERF3Q96E29 417 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 FADS3Q9Y5Q0 445 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 MED26O95402 600 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 CYP21A2P08686 494 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 IFNA8P32881 189 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 RINLQ6ZS11 566 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TRIM50Q86XT4 487 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 CCDC103Q8IW40 242 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 TRIM59Q8IWR1 403 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 RHOT1Q8IXI2 618 aa4.93□□□□□ -1.62
SCN1A-220ENST00000641603 DQX1Q8TE96 717 aaKnown RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 GPR101Q96P66 508 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.93□□□□□ -1.62
SCN1A-220ENST00000641603 PCDH18Q9HCL0 1135 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms