RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 KLRC1P26715 233 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 ADD1P35611 737 aaKnown RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 BEX3Q00994 111 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 GET4Q7L5D6 327 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 CCDC25Q86WR0 208 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 NOSTRINQ8IVI9 506 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 SYCE1Q8N0S2 351 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 MTMR14Q8NCE2 650 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 PIGOQ8TEQ8 1089 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 DNAJB3Q8WWF6 145 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 HSPH1Q92598 858 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 CGRRF1Q99675 332 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 SH3GLB2Q9NR46 395 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 ELOVL2Q9NXB9 296 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 QRICH2Q9H0J4 1663 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 CLIC2O15247 247 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 PLA2G4BP0C869 781 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 SCP2P22307 547 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 YWHABP31946 246 aaKnown RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 YWHAHQ04917 246 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 DACT2Q5SW24 774 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 TMC6Q7Z403 805 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF438Q7Z4V0 828 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 PALB2Q86YC2 1186 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 JAMLQ86YT9 394 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 KIFC3Q9BVG8 833 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 MYO18AQ92614 2054 aaKnown RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 NPTXRO95502 500 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 IFNB1P01574 187 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 CFIP05156 583 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 SLC2A3P11169 496 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 TLE2Q04725 743 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 PRKCZQ05513 592 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 CCDC144BQ3MJ40 725 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 TRIM60Q495X7 471 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 HSP90AA4PQ58FG1 418 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 AOPEPQ8N6M6 819 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 GPATCH11Q8N954 259 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 IQCDQ96DY2 449 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 ABHD8Q96I13 439 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 EPSTI1Q96J88 318 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 TMX3Q96JJ7 454 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 LXNQ9BS40 222 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 POLMQ9NP87 494 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 NAGPAQ9UK23 515 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 AGO2Q9UKV8 859 aaKnown RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 NDRG2Q9UN36 371 aaKnown RBP5.35□□□□□ -1.55
SCN1A-218ENST00000640036 NRCAMQ92823 1304 aa5.35□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 FAM95CA0A1B0GW59 222 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 PHF20L1A8MW92 1017 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 FAM47E-STBD1D6RA91 191 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ENC1O14682 589 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF543Q08ER8 600 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF177Q13360 481 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 EPHA7Q15375 998 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 CYP26C1Q6V0L0 522 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ANKS3Q6ZW76 656 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ERICH1Q86X53 443 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 CNPY4Q8N129 248 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 RSRC1Q96IZ7 334 aaKnown RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 FSD1LQ9BXM9 530 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 RBAKQ9NYW8 714 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 CLTCL1P53675 1640 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 TRAV19A0A0A6YYK7 116 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 EIF3CLB5ME19 914 aaKnown RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 HSF2BPO75031 334 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 PTPRAP18433 802 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 TAF6P49848 677 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 KHDRBS2Q5VWX1 349 aaKnown RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 METTL7BQ6UX53 244 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 CTAGE6Q86UF2 777 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 CCDC13Q8IYE1 715 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 CPA6Q8N4T0 437 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 CDKL2Q92772 493 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 EIF3CQ99613 913 aaKnown RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 SETD4Q9NVD3 440 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 NFU1Q9UMS0 254 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 SNX9Q9Y5X1 595 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 COPG1Q9Y678 874 aaKnown RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 SF3B1O75533 1304 aaKnown RBP eCLIP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ETFBP38117 255 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 LRRC32Q14392 662 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 PRAMEF19Q5SWL8 479 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF746Q6NUN9 644 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 RIOX2Q8IUF8 465 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 LRRC43Q8N309 656 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 DTNBP1Q96EV8 351 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 EPAS1Q99814 870 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 MCOLN1Q9GZU1 580 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 EXO5Q9H790 373 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 PRDM10Q9NQV6 1147 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 UBQLN1Q9UMX0 589 aaKnown RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 AGAP1Q9UPQ3 857 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 TMX2Q9Y320 296 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 TLL2Q9Y6L7 1015 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 MAP4P27816 1152 aaKnown RBP5.34□□□□□ -1.55
SCN1A-218ENST00000640036 AKT1P31749 480 aa5.34□□□□□ -1.55
SCN1A-218ENST00000640036 SKP1P63208 163 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms