RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 PROKR1Q8TCW9 393 aa5.97□□□□□ -1.45
CD44-239ENST00000639002 VTA1Q9NP79 307 aa5.97□□□□□ -1.45
CD44-239ENST00000639002 EIF2B4Q9UI10 523 aaKnown RBP5.97□□□□□ -1.45
CD44-239ENST00000639002 CENPVL1A0A0U1RR11 272 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 TLDC2A0PJX2 215 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 GRID2IPA4D2P6 1211 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 TMEM191CA6NGB0 347 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 LPXNO60711 386 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 RECQL4O94761 1208 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 CANXP27824 592 aaKnown RBP5.96□□□□□ -1.46
CD44-239ENST00000639002 FSTL1Q12841 308 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 STRN3Q13033 797 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 UGT8Q16880 541 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 MFSD14BQ5SR56 506 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 MDM1Q8TC05 714 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 GPRC5DQ9NZD1 345 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 HDAC5Q9UQL6 1122 aa5.96□□□□□ -1.46
CD44-239ENST00000639002 TMEM200CA6NKL6 621 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 TBKBP1A7MCY6 615 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 ZNF185O15231 689 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 ADCY6O43306 1168 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 ABHD16AO95870 558 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 HSP90B1P14625 803 aaKnown RBP5.95□□□□□ -1.46
CD44-239ENST00000639002 ZSCAN20P17040 1043 aaPredicted RBP5.95□□□□□ -1.46
CD44-239ENST00000639002 ENPP1P22413 925 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 SESN3P58005 492 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 NANOS3P60323 173 aaKnown RBP5.95□□□□□ -1.46
CD44-239ENST00000639002 LY6G5CQ5SRR4 150 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 IQSEC1Q6DN90 963 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 GIMAP6Q6P9H5 292 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 DRICH1Q6PGQ1 229 aaPredicted RBP5.95□□□□□ -1.46
CD44-239ENST00000639002 HDGFL2Q7Z4V5 671 aaPredicted RBP5.95□□□□□ -1.46
CD44-239ENST00000639002 SYNE4Q8N205 404 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 TSPEARQ8WU66 669 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 MYEOVQ96EZ4 313 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 TTC1Q99614 292 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 SLC46A2Q9BY10 475 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 SPON1Q9HCB6 807 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 TRPM5Q9NZQ8 1165 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 DPP7Q9UHL4 492 aa5.95□□□□□ -1.46
CD44-239ENST00000639002 PRR5-ARHGAP8B1AHC4 643 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 ULK1O75385 1050 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 GCP02774 474 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 RNASE9P60153 205 aaKnown RBP5.94□□□□□ -1.46
CD44-239ENST00000639002 NHLH2Q02577 135 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.94□□□□□ -1.46
CD44-239ENST00000639002 BMT2Q1RMZ1 405 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 TIGD2Q4W5G0 525 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 PRAMEF14Q5SWL7 426 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 Q6ZVL8 140 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 GDF7Q7Z4P5 450 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 REPS2Q8NFH8 660 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 SLC35B2Q8TB61 432 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 LMBR1Q8WVP7 490 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 CDC5LQ99459 802 aaKnown RBP5.94□□□□□ -1.46
CD44-239ENST00000639002 RPTORQ8N122 1335 aa5.94□□□□□ -1.46
CD44-239ENST00000639002 NCR1O76036 304 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 EYA4O95677 639 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 GASTP01350 101 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 LAG3P18627 525 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 CDK17Q00537 523 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 PTPAQ15257 358 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 KCNV1Q6PIU1 500 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 KCNK18Q7Z418 384 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 AFAP1L2Q8N4X5 818 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 RNF169Q8NCN4 708 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 OR10H5Q8NGA6 315 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 ACAP3Q96P50 834 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 DCLRE1CQ96SD1 692 aaKnown RBP5.93□□□□□ -1.46
CD44-239ENST00000639002 ORAI2Q96SN7 254 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 NEU1Q99519 415 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 AKIP1Q9NQ31 210 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 SCOCQ9UIL1 159 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 ATRNL1Q5VV63 1379 aa5.93□□□□□ -1.46
CD44-239ENST00000639002 B5MCH6 92 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 CRHR1P34998 444 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 ADRA1BP35368 520 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 ZEB1P37275 1124 aaPredicted RBP5.92□□□□□ -1.46
CD44-239ENST00000639002 MASP1P48740 699 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 MST1LQ2TV78 715 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 BEAN1Q3B7T3 259 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 PDCD4Q53EL6 469 aaKnown RBP5.92□□□□□ -1.46
CD44-239ENST00000639002 FAM102AQ5T9C2 384 aaPredicted RBP5.92□□□□□ -1.46
CD44-239ENST00000639002 LHFPL2Q6ZUX7 228 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 ZNF575Q86XF7 245 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 TGFBRAP1Q8WUH2 860 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 RIN2Q8WYP3 895 aaPredicted RBP5.92□□□□□ -1.46
CD44-239ENST00000639002 ZG16BQ96DA0 208 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 RAX2Q96IS3 184 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 FAM193BQ96PV7 902 aaPredicted RBP5.92□□□□□ -1.46
CD44-239ENST00000639002 CAAP1Q9H8G2 361 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 ANKFY1Q9P2R3 1169 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 CLCA2Q9UQC9 943 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 APOBEC2Q9Y235 224 aaKnown RBP5.92□□□□□ -1.46
CD44-239ENST00000639002 POLR2AP24928 1970 aaKnown RBP5.92□□□□□ -1.46
CD44-239ENST00000639002 PNPLA7Q6ZV29 1317 aa5.92□□□□□ -1.46
CD44-239ENST00000639002 RNASET2O00584 256 aaKnown RBP5.91□□□□□ -1.46
CD44-239ENST00000639002 NDUFA10O95299 355 aa5.91□□□□□ -1.46
CD44-239ENST00000639002 ADSLP30566 484 aaPredicted RBP5.91□□□□□ -1.46
CD44-239ENST00000639002 CCT2P78371 535 aaKnown RBP5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms