RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SPATA5Q8NB90 893 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 UNKQ9C0B0 810 aaKnown RBP6.08□□□□□ -1.44
SCN1A-216ENST00000637968 NCOA5Q9HCD5 579 aaKnown RBP6.08□□□□□ -1.44
SCN1A-216ENST00000637968 GINM1Q9NU53 330 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-216ENST00000637968 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF229Q9UJW7 825 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 SUGT1Q9Y2Z0 365 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 KIAA0232Q92628 1395 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 NPHP3-ACAD11A0A0J9YXS1 232 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 TTC26A0AVF1 554 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 STARD3NLO95772 234 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ABL1P00519 1130 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CDC25AP30304 524 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 BBS9Q3SYG4 887 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 KLHDC10Q6PID8 442 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF804AQ7Z570 1209 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 GPR141Q7Z602 305 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 TRIM22Q8IYM9 498 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 FITM2Q8N6M3 262 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ANKRD49Q8WVL7 239 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 GAB3Q8WWW8 586 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 MS4A14Q96JA4 679 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 NLRP4Q96MN2 994 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 SHCBP1LQ9BZQ2 653 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 GLT8D2Q9H1C3 349 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ERVK-11Q9UQG0 969 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 NOX1Q9Y5S8 564 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ANKRD34BA5PLL1 514 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 H7C1D1 291 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 DAPK3O43293 454 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 KLHL41O60662 606 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 FKBP6O75344 327 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 DAB1O75553 588 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CALM1P0DP23 149 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CALM2P0DP24 149 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CALM3P0DP25 149 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 MCF2P10911 925 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CCNB1P14635 433 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 BRAFP15056 766 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 LRPAP1P30533 357 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 PLTPP55058 493 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 PDE4DQ08499 809 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 COX10Q12887 443 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 TRIP10Q15642 601 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CLUL1Q15846 466 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 KYNUQ16719 465 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 EDRF1Q3B7T1 1238 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ANKRD20A4Q4UJ75 823 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 SNRNP48Q6IEG0 339 aaKnown RBP6.08□□□□□ -1.44
SCN1A-216ENST00000637968 SULT6B1Q6IMI4 303 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CYP2U1Q7Z449 544 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CLVS1Q8IUQ0 354 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-216ENST00000637968 RASSF5Q8WWW0 418 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 FAM136AQ96C01 138 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 PGM2Q96G03 612 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ACAP3Q96P50 834 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CCSER1Q9C0I3 900 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 KIAA1586Q9HCI6 787 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 NLRC4Q9NPP4 1024 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 DNAJC17Q9NVM6 304 aaKnown RBP6.08□□□□□ -1.44
SCN1A-216ENST00000637968 DISP1Q96F81 1524 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 TMEM120BA0PK00 339 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ZSCAN5CA6NGD5 496 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-216ENST00000637968 FTCDO95954 541 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ALOX5P09917 674 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 MX2P20592 715 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ANXA13P27216 316 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 DSTNP60981 165 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 HERVK_113P62684 666 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 KCNMA1Q12791 1236 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 PLEKHA7Q6IQ23 1121 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ELMSAN1Q6PJG2 1045 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 Q6ZNX1 250 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 C4orf50Q6ZRC1 276 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 C3orf62Q6ZUJ4 267 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CATSPER1Q8NEC5 780 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 OR6Y1Q8NGX8 325 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 NSL1Q96IY1 281 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 C8orf37Q96NL8 207 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 GMIPQ9P107 970 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 CLEC11AQ9Y240 323 aa6.08□□□□□ -1.44
SCN1A-216ENST00000637968 ADGRF5Q8IZF2 1346 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 IQANK1A0A1B0GTG1 560 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 AREL1O15033 823 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 ASNA1O43681 348 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 SGTAO43765 313 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 PABPC1P11940 636 aaKnown RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 P4HA1P13674 534 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 CCDC130P13994 396 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 SPARCL1Q14515 664 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 ACAP1Q15027 740 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 PRR16Q569H4 304 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 RESP18Q5W5W9 173 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 DSTYKQ6XUX3 929 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 GALNT7Q86SF2 657 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 METTL16Q86W50 562 aaKnown RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 ERI1Q8IV48 349 aaKnown RBP6.07□□□□□ -1.44
SCN1A-216ENST00000637968 ATL1Q8WXF7 558 aa6.07□□□□□ -1.44
SCN1A-216ENST00000637968 AZIN2Q96A70 460 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms