RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TRIM7Q9C029 511 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 CCDC113Q9H0I3 377 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 DPH5Q9H2P9 285 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 TMEM206Q9H813 350 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ARHGEF10LQ9HCE6 1279 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 A1CFQ9NQ94 594 aaKnown RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 OLFML3Q9NRN5 406 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 KLC4Q9NSK0 619 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 INTS9Q9NV88 658 aaKnown RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 EHD2Q9NZN4 543 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 SALL4Q9UJQ4 1053 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ODF2LQ9ULJ1 636 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 NCANO14594 1321 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 GRIN2DO15399 1336 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 FRMD3A2A2Y4 597 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ANKRD65E5RJM6 399 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 SPOPO43791 374 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 CTNND1O60716 968 aaKnown RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 GAS7O60861 476 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 GAS8O95995 478 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 HMGCRP04035 888 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 GSTA1P08263 222 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 VIMP08670 466 aaKnown RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 RBM5P52756 815 aaKnown RBP eCLIP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 PMS2P54278 862 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 MCCD1P59942 119 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 SNRPFP62306 86 aaKnown RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 MRPS25P82663 173 aaKnown RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 CAV1Q03135 178 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ICA1Q05084 483 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ITGB3BPQ13352 177 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ZRSR2Q15696 482 aaKnown RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 CERKLQ49MI3 558 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 SYDE2Q5VT97 1194 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 BTNL9Q6UXG8 535 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 TMEM179Q6ZVK1 233 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 SYDE1Q6ZW31 735 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 INTS8Q75QN2 995 aaKnown RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ZNF571Q7Z3V5 609 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 ALYREFQ86V81 257 aaKnown RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 RASGEF1CQ8N431 466 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 METTL13Q8N6R0 699 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 TRIM11Q96F44 468 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 SAMD11Q96NU1 681 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 GDF15Q99988 308 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 DDX47Q9H0S4 455 aaKnown RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 KCTD10Q9H3F6 313 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 KCNMB3Q9NPA1 279 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 NKIRAS1Q9NYS0 192 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 DNAJC12Q9UKB3 198 aa4.28□□□□□ -1.72
SCN1A-214ENST00000637038 CTDP1Q9Y5B0 961 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 COL11A1P12107 1806 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-214ENST00000637038 TLDC2A0PJX2 215 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 POTEFA5A3E0 1075 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 DAPK3O43293 454 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PHF2O75151 1096 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 NOL4O94818 638 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PFKMP08237 780 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 POTEIP0CG38 1075 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 GBP2P32456 591 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PTENP60484 403 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 MAGOHP61326 146 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ERVK-9P63128 1117 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PUM1Q14671 1186 aaKnown RBP eCLIP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 EPHA7Q15375 998 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PTPROQ16827 1216 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 RBM26Q5T8P6 1007 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 POTEGQ6S5H5 508 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 POTEEQ6S8J3 1075 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 HHIPL2Q6UWX4 724 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 CCDC105Q8IYK2 499 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 CD99L2Q8TCZ2 262 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 CRYGNQ8WXF5 182 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 GJA10Q969M2 543 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 MAGOHBQ96A72 148 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 XPO6Q96QU8 1125 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 REEP2Q9BRK0 252 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ERP44Q9BS26 406 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ROPN1BQ9BZX4 212 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 TRIM31Q9BZY9 425 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 INTS2Q9H0H0 1204 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 WNT8AQ9H1J5 351 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ROPN1Q9HAT0 212 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 LARSQ9P2J5 1176 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 TMEM59LQ9UK28 342 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ATP8A1Q9Y2Q0 1164 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 MRPL11Q9Y3B7 192 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PCDHA2Q9Y5H9 948 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 CENPFP49454 3210 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 SBF1O95248 1867 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 CCDC189A1A4V9 331 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 TRAPPC3O43617 180 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 TLR2O60603 784 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 EFCAB14O75071 495 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 SUN1O94901 812 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PAEPP09466 180 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 FAM153BP0C7A2 387 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 POLR2MP0CAP2 368 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 MYBP10242 640 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ECHS1P30084 290 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms