RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 RAPGEF1Q13905 1077 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 EPC2Q52LR7 807 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 ZBTB41Q5SVQ8 909 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 HGSNATQ68CP4 663 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 IQCEQ6IPM2 695 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 MAP7D2Q96T17 732 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 FDXACB1Q9BRP7 624 aaPredicted RBP18.31■□□□□ 0.52
CLN3-252ENST00000636907 NRCAMQ92823 1304 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 CASP8AP2Q9UKL3 1982 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 A0A0U1RQJ8 604 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 ABLIM1O14639 778 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 PMM2O15305 246 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 IQCF3P0C7M6 154 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 DLATP10515 647 aaKnown RBP18.31■□□□□ 0.52
CLN3-252ENST00000636907 HARSP12081 509 aaKnown RBP18.31■□□□□ 0.52
CLN3-252ENST00000636907 WNT7BP56706 349 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 CACNB2Q08289 660 aaPredicted RBP18.31■□□□□ 0.52
CLN3-252ENST00000636907 CETN1Q12798 172 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 NFRKBQ6P4R8 1299 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 USP37Q86T82 979 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 IFNLR1Q8IU57 520 aaPredicted RBP18.31■□□□□ 0.52
CLN3-252ENST00000636907 CCDC170Q8IYT3 715 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 KIAA0319LQ8IZA0 1049 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 ATRIPQ8WXE1 791 aa18.31■□□□□ 0.52
CLN3-252ENST00000636907 REXO2Q9Y3B8 237 aaKnown RBP18.31■□□□□ 0.52
CLN3-252ENST00000636907 GOLGA6L9A6NEM1 432 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 B4GALT5O43286 388 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 C6orf222P0C671 652 aaPredicted RBP18.3■□□□□ 0.52
CLN3-252ENST00000636907 CYLC1P35663 651 aaPredicted RBP18.3■□□□□ 0.52
CLN3-252ENST00000636907 MAP2K2P36507 400 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 EIF4A3P38919 411 aaKnown RBP18.3■□□□□ 0.52
CLN3-252ENST00000636907 JAM2P57087 298 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 MAP2K1Q02750 393 aaPredicted RBP18.3■□□□□ 0.52
CLN3-252ENST00000636907 PRPF4BQ13523 1007 aaKnown RBP18.3■□□□□ 0.52
CLN3-252ENST00000636907 PSMD6Q15008 389 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 KRT39Q6A163 491 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 TSHZ1Q6ZSZ6 1077 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 ZBTB33Q86T24 672 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 CD99L2Q8TCZ2 262 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 SPAG5Q96R06 1193 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 TCHPQ9BT92 498 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 TMEM8AQ9HCN3 771 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 AIPL1Q9NZN9 384 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 APEX2Q9UBZ4 518 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 MYO6Q9UM54 1294 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 KAT6AQ92794 2004 aa18.3■□□□□ 0.52
CLN3-252ENST00000636907 LRRN2O75325 713 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 CSDE1O75534 798 aaKnown RBP18.29■□□□□ 0.52
CLN3-252ENST00000636907 PROZP22891 400 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 GTF2H1P32780 548 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 GPC3P51654 580 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 GJA9P57773 515 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 HTRA3P83110 453 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 PURAQ00577 322 aaKnown RBP18.29■□□□□ 0.52
CLN3-252ENST00000636907 MCL1Q07820 350 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 HIC1Q14526 733 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 HSP90AA2PQ14568 343 aaPredicted RBP18.29■□□□□ 0.52
CLN3-252ENST00000636907 SEZ6Q53EL9 994 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 ATF7IP2Q5U623 682 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 CCDC42Q96M95 316 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 PTPRHQ9HD43 1115 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 PRMT7Q9NVM4 692 aaPredicted RBP18.29■□□□□ 0.52
CLN3-252ENST00000636907 RBAKQ9NYW8 714 aaPredicted RBP18.29■□□□□ 0.52
CLN3-252ENST00000636907 DNAJC12Q9UKB3 198 aa18.29■□□□□ 0.52
CLN3-252ENST00000636907 MBLAC1A4D2B0 266 aaPredicted RBP18.28■□□□□ 0.52
CLN3-252ENST00000636907 EIF3CLB5ME19 914 aaKnown RBP18.28■□□□□ 0.52
CLN3-252ENST00000636907 SEPT4O43236 478 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 FAM189A1O60320 539 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 SERPING1P05155 500 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 ELNP15502 786 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 MAPK8IP2Q13387 824 aaPredicted RBP18.28■□□□□ 0.52
CLN3-252ENST00000636907 ASIC2Q16515 512 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 AMHR2Q16671 573 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 FAM187BQ17R55 369 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 SLC9C1Q4G0N8 1177 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 PHLDB3Q6NSJ2 640 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 NLRP7Q8WX94 980 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 EIF3CQ99613 913 aaKnown RBP18.28■□□□□ 0.52
CLN3-252ENST00000636907 KATNAL1Q9BW62 490 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 SRRDQ9UH36 339 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 ZEB2O60315 1214 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 PGK1P00558 417 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 CLDN10P78369 228 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 ADAM17P78536 824 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 ARID5AQ03989 594 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 TMEM132AQ24JP5 1023 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 TDRD12Q587J7 1177 aaKnown RBP18.28■□□□□ 0.52
CLN3-252ENST00000636907 EEF1DP3Q658K8 133 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 LMBRD2Q68DH5 695 aaPredicted RBP18.28■□□□□ 0.52
CLN3-252ENST00000636907 MPZL3Q6UWV2 235 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 SV2AQ7L0J3 742 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 ZNF410Q86VK4 478 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 CDR2LQ86X02 465 aaPredicted RBP18.28■□□□□ 0.52
CLN3-252ENST00000636907 ZNF516Q92618 1163 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 SEMA4DQ92854 862 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 FAM84AQ96KN4 292 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 FNBP1Q96RU3 617 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 STK33Q9BYT3 514 aa18.28■□□□□ 0.52
CLN3-252ENST00000636907 FAM49AQ9H0Q0 323 aaPredicted RBP18.28■□□□□ 0.52
CLN3-252ENST00000636907 UPF3AQ9H1J1 476 aaKnown RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms