RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 GSTCDQ8NEC7 633 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 CCDC51Q96ER9 411 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 GPR62Q9BZJ7 368 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 PARP2Q9UGN5 583 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 GIT1Q9Y2X7 761 aa17.93■□□□□ 0.46
CLN3-246ENST00000636228 LRRIQ4A6NIV6 560 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 GALR2O43603 387 aaPredicted RBP17.92■□□□□ 0.46
CLN3-246ENST00000636228 N4BP1O75113 896 aaKnown RBP17.92■□□□□ 0.46
CLN3-246ENST00000636228 RFPL2O75678 378 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 NEFLP07196 543 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 MCM7P33993 719 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 TRIM29Q14134 588 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 PCBP1Q15365 356 aaKnown RBP eCLIP17.92■□□□□ 0.46
CLN3-246ENST00000636228 SLC27A1Q6PCB7 646 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 OTOP3Q7RTS5 596 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 FLCNQ8NFG4 579 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 RSAD2Q8WXG1 361 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 COLEC11Q9BWP8 271 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 MFSD1Q9H3U5 465 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 KCNK12Q9HB15 430 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 USP20Q9Y2K6 914 aa17.92■□□□□ 0.46
CLN3-246ENST00000636228 A0A1B0GUA9 196 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 TTLL13PA6NNM8 815 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 MED24O75448 989 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 NR1I2O75469 434 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 ADH1AP07327 375 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 RPL17P18621 184 aaKnown RBP17.91■□□□□ 0.46
CLN3-246ENST00000636228 DSG1Q02413 1049 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 C15orf39Q6ZRI6 1047 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 CATSPER3Q86XQ3 398 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 PAAF1Q9BRP4 392 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 CXCL16Q9H2A7 254 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 RXFP1Q9HBX9 757 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 POLD4Q9HCU8 107 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 SSX2IPQ9Y2D8 614 aa17.91■□□□□ 0.46
CLN3-246ENST00000636228 KMT2EQ8IZD2 1858 aa17.9■□□□□ 0.46
CLN3-246ENST00000636228 ZDBF2Q9HCK1 2354 aa17.9■□□□□ 0.46
CLN3-246ENST00000636228 NARSO43776 548 aaKnown RBP17.9■□□□□ 0.46
CLN3-246ENST00000636228 SEC24BO95487 1268 aa17.9■□□□□ 0.46
CLN3-246ENST00000636228 GLUD1P00367 558 aa17.9■□□□□ 0.46
CLN3-246ENST00000636228 GBP2P32456 591 aaPredicted RBP17.9■□□□□ 0.46
CLN3-246ENST00000636228 TDGQ13569 410 aa17.9■□□□□ 0.46
CLN3-246ENST00000636228 ASTLQ6HA08 431 aaPredicted RBP17.9■□□□□ 0.46
CLN3-246ENST00000636228 FUT10Q6P4F1 479 aa17.9■□□□□ 0.46
CLN3-246ENST00000636228 ST13P5Q8NFI4 369 aaPredicted RBP17.9■□□□□ 0.46
CLN3-246ENST00000636228 NFKBIZQ9BYH8 718 aa17.9■□□□□ 0.46
CLN3-246ENST00000636228 CHST7Q9NS84 486 aa17.9■□□□□ 0.46
CLN3-246ENST00000636228 TGM5O43548 720 aa17.89■□□□□ 0.45
CLN3-246ENST00000636228 PI15O43692 258 aa17.89■□□□□ 0.45
CLN3-246ENST00000636228 GFRA3O60609 400 aa17.89■□□□□ 0.45
CLN3-246ENST00000636228 XRCC6P12956 609 aaKnown RBP eCLIP17.89■□□□□ 0.45
CLN3-246ENST00000636228 LIG1P18858 919 aa17.89■□□□□ 0.45
CLN3-246ENST00000636228 ZNF174Q15697 407 aa17.89■□□□□ 0.45
CLN3-246ENST00000636228 POTEGQ6S5H5 508 aa17.89■□□□□ 0.45
CLN3-246ENST00000636228 HACE1Q8IYU2 909 aa17.89■□□□□ 0.45
CLN3-246ENST00000636228 HASPINQ8TF76 798 aa17.89■□□□□ 0.45
CLN3-246ENST00000636228 RIN2Q8WYP3 895 aaPredicted RBP17.89■□□□□ 0.45
CLN3-246ENST00000636228 BSNDQ8WZ55 320 aa17.89■□□□□ 0.45
CLN3-246ENST00000636228 SMG7Q92540 1137 aaKnown RBP17.89■□□□□ 0.45
CLN3-246ENST00000636228 ZNF707Q96C28 371 aaPredicted RBP17.89■□□□□ 0.45
CLN3-246ENST00000636228 WDR6Q9NNW5 1121 aaKnown RBP17.89■□□□□ 0.45
CLN3-246ENST00000636228 ADAM28Q9UKQ2 775 aa17.89■□□□□ 0.45
CLN3-246ENST00000636228 TADA2AO75478 443 aa17.88■□□□□ 0.45
CLN3-246ENST00000636228 NPR3P17342 541 aa17.88■□□□□ 0.45
CLN3-246ENST00000636228 USP41Q3LFD5 358 aa17.88■□□□□ 0.45
CLN3-246ENST00000636228 CWF19L1Q69YN2 538 aaKnown RBP17.88■□□□□ 0.45
CLN3-246ENST00000636228 PRSS55Q6UWB4 352 aaPredicted RBP17.88■□□□□ 0.45
CLN3-246ENST00000636228 CMASQ8NFW8 434 aaPredicted RBP17.88■□□□□ 0.45
CLN3-246ENST00000636228 MYADMQ96S97 322 aa17.88■□□□□ 0.45
CLN3-246ENST00000636228 NT5C3AQ9H0P0 336 aa17.88■□□□□ 0.45
CLN3-246ENST00000636228 IRF2BPLQ9H1B7 796 aa17.88■□□□□ 0.45
CLN3-246ENST00000636228 SNTG2Q9NY99 539 aa17.88■□□□□ 0.45
CLN3-246ENST00000636228 FBXL21Q9UKT6 434 aa17.88■□□□□ 0.45
CLN3-246ENST00000636228 CASTOR2A6NHX0 329 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 EDN1P05305 212 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 NUBP1P53384 320 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 GRIK3Q13003 919 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 TMEM132AQ24JP5 1023 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 PPP4R3CPQ6ZMV5 832 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 CCDC83Q8IWF9 413 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 ZBTB8OSQ8IWT0 167 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 SIX5Q8N196 739 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 NACC1Q96RE7 527 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 FZD8Q9H461 694 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 PDZD7Q9H5P4 517 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 PIDD1Q9HB75 910 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 TUFT1Q9NNX1 390 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 PRMT7Q9NVM4 692 aaPredicted RBP17.87■□□□□ 0.45
CLN3-246ENST00000636228 PPP4R2Q9NY27 417 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 CLUHO75153 1309 aa17.87■□□□□ 0.45
CLN3-246ENST00000636228 USP34Q70CQ2 3546 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 PTGESO14684 152 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 ST18O60284 1047 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 CFHP08603 1231 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 CLCN5P51795 746 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 HSP90AA2PQ14568 343 aaPredicted RBP17.86■□□□□ 0.45
CLN3-246ENST00000636228 SAFBQ15424 915 aaKnown RBP eCLIP17.86■□□□□ 0.45
CLN3-246ENST00000636228 RTP2Q5QGT7 225 aa17.86■□□□□ 0.45
CLN3-246ENST00000636228 CDCA2Q69YH5 1023 aaPredicted RBP17.86■□□□□ 0.45
CLN3-246ENST00000636228 LILRA6Q6PI73 481 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms