RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 THNSL1Q8IYQ7 743 aa22.73■■□□□ 1.23
CLN3-240ENST00000631023 MICALL1Q8N3F8 863 aa22.73■■□□□ 1.23
CLN3-240ENST00000631023 DNAJC19Q96DA6 116 aa22.73■■□□□ 1.23
CLN3-240ENST00000631023 FAM193BQ96PV7 902 aaPredicted RBP22.73■■□□□ 1.23
CLN3-240ENST00000631023 GAD1Q99259 594 aa22.73■■□□□ 1.23
CLN3-240ENST00000631023 HCSTQ9UBK5 93 aa22.73■■□□□ 1.23
CLN3-240ENST00000631023 CIZ1Q9ULV3 898 aaPredicted RBP22.73■■□□□ 1.23
CLN3-240ENST00000631023 ARL5CA6NH57 179 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 IDEP14735 1019 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 ZPBP2Q6X784 338 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 ALG13Q9NP73 1137 aaKnown RBP22.72■■□□□ 1.23
CLN3-240ENST00000631023 ZMYM2Q9UBW7 1377 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 EYSQ5T1H1 3165 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 INPPL1O15357 1258 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 ITGB1P05556 798 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 AKAP5P24588 427 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 MLH1P40692 756 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 CCDC85BQ15834 202 aaPredicted RBP22.72■■□□□ 1.23
CLN3-240ENST00000631023 ZNF568Q3ZCX4 644 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 PPM1EQ8WY54 764 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 BICD1Q96G01 975 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 TBX20Q9UMR3 447 aa22.72■■□□□ 1.23
CLN3-240ENST00000631023 GRM6O15303 877 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 ZC3H11AO75152 810 aaKnown RBP eCLIP22.71■■□□□ 1.23
CLN3-240ENST00000631023 TOM1L1O75674 476 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 FGF18O76093 207 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 BCAR1P56945 870 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 KRT17Q04695 432 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 UBE3AQ05086 875 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 ATG2AQ2TAZ0 1938 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 CCDC65Q8IXS2 484 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 CEP57L1Q8IYX8 460 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 SPPL3Q8TCT6 385 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 STAMQ92783 540 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 NRDE2Q9H7Z3 1164 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 MRPL44Q9H9J2 332 aaKnown RBP22.71■■□□□ 1.23
CLN3-240ENST00000631023 PTPRHQ9HD43 1115 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 PANK4Q9NVE7 773 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 SPG21Q9NZD8 308 aa22.71■■□□□ 1.23
CLN3-240ENST00000631023 PRUNE2Q8WUY3 3088 aa22.7■■□□□ 1.23
CLN3-240ENST00000631023 POMCP01189 267 aa22.7■■□□□ 1.22
CLN3-240ENST00000631023 GTF2BQ00403 316 aa22.7■■□□□ 1.22
CLN3-240ENST00000631023 HERC4Q5GLZ8 1057 aaPredicted RBP22.7■■□□□ 1.22
CLN3-240ENST00000631023 MPZL3Q6UWV2 235 aa22.7■■□□□ 1.22
CLN3-240ENST00000631023 SFR1Q86XK3 245 aa22.7■■□□□ 1.22
CLN3-240ENST00000631023 RPS6KC1Q96S38 1066 aa22.7■■□□□ 1.22
CLN3-240ENST00000631023 GBP3Q9H0R5 595 aa22.7■■□□□ 1.22
CLN3-240ENST00000631023 ST6GALNAC4Q9H4F1 302 aa22.7■■□□□ 1.22
CLN3-240ENST00000631023 SNTG2Q9NY99 539 aa22.7■■□□□ 1.22
CLN3-240ENST00000631023 USP25Q9UHP3 1055 aa22.7■■□□□ 1.22
CLN3-240ENST00000631023 PUF60Q9UHX1 559 aaKnown RBP22.7■■□□□ 1.22
CLN3-240ENST00000631023 BRWD1Q9NSI6 2320 aa22.7■■□□□ 1.22
CLN3-240ENST00000631023 A0A1B0GVL5 298 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 A0A1W2PQ27 194 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 A0A1W2PQ64 194 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 A0A1W2PQD8 194 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 MCF2P10911 925 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 NMT1P30419 496 aaKnown RBP22.69■■□□□ 1.22
CLN3-240ENST00000631023 LIG4P49917 911 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 PLCB3Q01970 1234 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 TIGD5Q53EQ6 642 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 ZNF720Q7Z2F6 126 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 ZBTB33Q86T24 672 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 POF1BQ8WVV4 589 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 ZFP42Q96MM3 310 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 FIZ1Q96SL8 496 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 CCDC94Q9BW85 323 aaPredicted RBP22.69■■□□□ 1.22
CLN3-240ENST00000631023 TRIM9Q9C026 710 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 CDT1Q9H211 546 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 KLK14Q9P0G3 267 aa22.69■■□□□ 1.22
CLN3-240ENST00000631023 CLDN3O15551 220 aa22.68■■□□□ 1.22
CLN3-240ENST00000631023 RECQL4O94761 1208 aa22.68■■□□□ 1.22
CLN3-240ENST00000631023 ALDH2P05091 517 aa22.68■■□□□ 1.22
CLN3-240ENST00000631023 PFKFB1P16118 471 aa22.68■■□□□ 1.22
CLN3-240ENST00000631023 PROZP22891 400 aa22.68■■□□□ 1.22
CLN3-240ENST00000631023 MATR3P43243 847 aaKnown RBP eCLIP22.68■■□□□ 1.22
CLN3-240ENST00000631023 AFF1P51825 1210 aaKnown RBP22.68■■□□□ 1.22
CLN3-240ENST00000631023 ZNF280BQ86YH2 543 aa22.68■■□□□ 1.22
CLN3-240ENST00000631023 HVCN1Q96D96 273 aa22.68■■□□□ 1.22
CLN3-240ENST00000631023 TMEM175Q9BSA9 504 aa22.68■■□□□ 1.22
CLN3-240ENST00000631023 GDPD2Q9HCC8 539 aa22.68■■□□□ 1.22
CLN3-240ENST00000631023 OLFML3Q9NRN5 406 aa22.68■■□□□ 1.22
CLN3-240ENST00000631023 GDAQ9Y2T3 454 aa22.68■■□□□ 1.22
CLN3-240ENST00000631023 FRMD3A2A2Y4 597 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 HNRNPDLO14979 420 aaKnown RBP22.67■■□□□ 1.22
CLN3-240ENST00000631023 SLFN14P0C7P3 912 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 PBX3P40426 434 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 GRM5P41594 1212 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 SCNN1GP51170 649 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 YARSP54577 528 aaKnown RBP22.67■■□□□ 1.22
CLN3-240ENST00000631023 CNNM4Q6P4Q7 775 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 TMEM169Q96HH4 297 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 C7orf25Q9BPX7 421 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 TOPORSQ9NS56 1045 aaPredicted RBP22.67■■□□□ 1.22
CLN3-240ENST00000631023 ANKFY1Q9P2R3 1169 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 LZTS1Q9Y250 596 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 PCDHB13Q9Y5F0 798 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 GOLGA6L4A6NEF3 574 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 NR1I2O75469 434 aa22.67■■□□□ 1.22
CLN3-240ENST00000631023 DDHD2O94830 711 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms