RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 HTRA4P83105 476 aaPredicted RBP20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 NOLC1Q14978 699 aaKnown RBP eCLIP20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 SLFN12LQ6IEE8 588 aa20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 GLB1LQ6UWU2 654 aa20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 EPM2AIP1Q7L775 607 aaPredicted RBP20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 SMG8Q8ND04 991 aaKnown RBP20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 GLIS3Q8NEA6 775 aa20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 ZNF507Q8TCN5 953 aa20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 RSPH1Q8WYR4 309 aa20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 LPPQ93052 612 aa20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 PBX4Q9BYU1 374 aa20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 TMEM117Q9H0C3 514 aa20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 NXF3Q9H4D5 531 aaKnown RBP20.91■□□□□ 0.94
SQSTM1-216ENST00000626660 FNDC1Q4ZHG4 1894 aaPredicted RBP20.9■□□□□ 0.94
SQSTM1-216ENST00000626660 MCL1Q07820 350 aa20.9■□□□□ 0.94
SQSTM1-216ENST00000626660 KCNA1Q09470 495 aa20.9■□□□□ 0.94
SQSTM1-216ENST00000626660 STK4Q13043 487 aa20.9■□□□□ 0.94
SQSTM1-216ENST00000626660 DEFB123Q8N688 67 aa20.9■□□□□ 0.94
SQSTM1-216ENST00000626660 ZBTB45Q96K62 511 aaPredicted RBP20.9■□□□□ 0.94
SQSTM1-216ENST00000626660 CCDC94Q9BW85 323 aaPredicted RBP20.9■□□□□ 0.94
SQSTM1-216ENST00000626660 CLSTN2Q9H4D0 955 aa20.9■□□□□ 0.94
SQSTM1-216ENST00000626660 RSAD1Q9HA92 442 aa20.9■□□□□ 0.94
SQSTM1-216ENST00000626660 PARP2Q9UGN5 583 aa20.9■□□□□ 0.94
SQSTM1-216ENST00000626660 HES2Q9Y543 173 aa20.9■□□□□ 0.94
SQSTM1-216ENST00000626660 TBKBP1A7MCY6 615 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 DNAJB2P25686 324 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 PBX2P40425 430 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 BTG3Q14201 252 aaPredicted RBP20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 CAMK4Q16566 473 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 GPR153Q6NV75 609 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 AGMOQ6ZNB7 445 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 NELFCDQ8IXH7 590 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 CMTR2Q8IYT2 770 aaKnown RBP20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 KIAA0895Q8NCT3 520 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 SPATA20Q8TB22 786 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 HELQQ8TDG4 1101 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 SCFD1Q8WVM8 642 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 ERCC4Q92889 916 aaPredicted RBP20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 GBP3Q9H0R5 595 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 NUP62CLQ9H1M0 184 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 GIT1Q9Y2X7 761 aa20.89■□□□□ 0.93
SQSTM1-216ENST00000626660 CITO14578 2027 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 ANKRD63C9JTQ0 380 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 ABLIM1O14639 778 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 MYOGP15173 224 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 PTMSP20962 102 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 GRM5P41594 1212 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 GATMP50440 423 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 YARSP54577 528 aaKnown RBP20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 KYAT1Q16773 422 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 BMT2Q1RMZ1 405 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 PAN2Q504Q3 1202 aaKnown RBP20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 CLLU1OSQ5K130 101 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 SLC39A4Q6P5W5 647 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 HS2ST1Q7LGA3 356 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 THNSL1Q8IYQ7 743 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 FIBCD1Q8N539 461 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 URGCPQ8TCY9 931 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 GPT2Q8TD30 523 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 POMGNT1Q8WZA1 660 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 TIFAQ96CG3 184 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 ZNF689Q96CS4 500 aaPredicted RBP20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 MSTO1Q9BUK6 570 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 MRPL9Q9BYD2 267 aaKnown RBP20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 RNF39Q9H2S5 420 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 NKX2-4Q9H2Z4 354 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 RNF19AQ9NV58 838 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 SNTG2Q9NY99 539 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 INPP5FQ9Y2H2 1132 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 GDAQ9Y2T3 454 aa20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 YBX2Q9Y2T7 364 aaKnown RBP20.88■□□□□ 0.93
SQSTM1-216ENST00000626660 ZMYM2Q9UBW7 1377 aa20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 COL4A6Q14031 1691 aa20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 A0A0B4J269 797 aa20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 MEIS3P2A8K0S8 358 aa20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 OGTO15294 1046 aa20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 CA3P07451 260 aa20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 AKAP5P24588 427 aa20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 KNOP1Q1ED39 458 aaKnown RBP20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 NOMO2Q5JPE7 1267 aa20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 SP7Q8TDD2 431 aaPredicted RBP20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 CASD1Q96PB1 797 aa20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 RPS6KC1Q96S38 1066 aa20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 SLC28A3Q9HAS3 691 aa20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 RC3H2Q9HBD1 1191 aaKnown RBP20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 TOPORSQ9NS56 1045 aaPredicted RBP20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 STYXL1Q9Y6J8 313 aa20.87■□□□□ 0.93
SQSTM1-216ENST00000626660 MYO9BQ13459 2157 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 LCHNA4D1U4 455 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 OFD1O75665 1012 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 RECQL4O94761 1208 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 CLTAP09496 248 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 GARTP22102 1010 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 HOXD13P35453 343 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 OSTNP61366 133 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 SNRPFP62306 86 aaKnown RBP20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 ZNF658Q5TYW1 1059 aaPredicted RBP20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 PPP2R2DQ66LE6 453 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 ARMCX5Q6P1M9 558 aa20.86■□□□□ 0.93
SQSTM1-216ENST00000626660 LRRC43Q8N309 656 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms