RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 F2P00734 622 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 TYRP1P17643 537 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 PTH2RP49190 550 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 KPNA1P52294 538 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-208ENST00000625916 BLOC1S1P78537 153 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 FOXI1Q12951 378 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 PABPC4Q13310 644 aaKnown RBP eCLIP4.36□□□□□ -1.71
SCN1A-208ENST00000625916 TP53BP2Q13625 1128 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 NFE2L2Q16236 605 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 ABHD17BQ5VST6 288 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 ANKS6Q68DC2 871 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 KIF18BQ86Y91 864 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 TFAP2CQ92754 450 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 ORAI3Q9BRQ5 295 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 PRDM13Q9H4Q3 707 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 DKK2Q9UBU2 259 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 CDK11AQ9UQ88 783 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-208ENST00000625916 MAP3K2Q9Y2U5 619 aa4.36□□□□□ -1.71
SCN1A-208ENST00000625916 USP15Q9Y4E8 981 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-208ENST00000625916 PRSS38A1L453 326 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 RFPL3O75679 317 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 LTA4HP09960 611 aaKnown RBP4.35□□□□□ -1.71
SCN1A-208ENST00000625916 ELLP55199 621 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-208ENST00000625916 DSG1Q02413 1049 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 RESTQ13127 1097 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 BMS1Q14692 1282 aaKnown RBP4.35□□□□□ -1.71
SCN1A-208ENST00000625916 BTNL9Q6UXG8 535 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 HDGFL2Q7Z4V5 671 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-208ENST00000625916 GLCCI1Q86VQ1 547 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 BOLLQ8N9W6 283 aaKnown RBP4.35□□□□□ -1.71
SCN1A-208ENST00000625916 RNF169Q8NCN4 708 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 SIMC1Q8NDZ2 872 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 SH3TC2Q8TF17 1288 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 ASB10Q8WXI3 467 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 SPATA5L1Q9BVQ7 753 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 FPGT-TNNI3KV9GXZ4 949 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 ZMYM3Q14202 1370 aa4.35□□□□□ -1.71
SCN1A-208ENST00000625916 LCHNA4D1U4 455 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 TBKBP1A7MCY6 615 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 TGM5O43548 720 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 SPDEFO95238 335 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 ESRRBO95718 433 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 C1RP00736 705 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 ITGAMP11215 1152 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 LSP1P33241 339 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 MPP3Q13368 585 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 SART3Q15020 963 aaKnown RBP4.34□□□□□ -1.71
SCN1A-208ENST00000625916 SP5Q6BEB4 398 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-208ENST00000625916 SLC44A3Q8N4M1 653 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 MDM1Q8TC05 714 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 CAGE1Q8TC20 777 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 MRFAP1L1Q96HT8 127 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 PHACTR3Q96KR7 559 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 GPR101Q96P66 508 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-208ENST00000625916 DNAJC2Q99543 621 aaKnown RBP4.34□□□□□ -1.71
SCN1A-208ENST00000625916 ADAM2Q99965 735 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 ANO3Q9BYT9 981 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 TLK1Q9UKI8 766 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 NUMBLQ9Y6R0 609 aa4.34□□□□□ -1.71
SCN1A-208ENST00000625916 ITGA10O75578 1167 aa4.33□□□□□ -1.72
SCN1A-208ENST00000625916 EGR2P11161 476 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-208ENST00000625916 SF3A1Q15459 793 aaKnown RBP4.33□□□□□ -1.72
SCN1A-208ENST00000625916 GPR158Q5T848 1215 aa4.33□□□□□ -1.72
SCN1A-208ENST00000625916 FAM102AQ5T9C2 384 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-208ENST00000625916 PDZD4Q76G19 769 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-208ENST00000625916 ZNF610Q8N9Z0 462 aa4.33□□□□□ -1.72
SCN1A-208ENST00000625916 ZFP28Q8NHY6 868 aa4.33□□□□□ -1.72
SCN1A-208ENST00000625916 SLC9A6Q92581 669 aa4.33□□□□□ -1.72
SCN1A-208ENST00000625916 MS4A5Q9H3V2 200 aa4.33□□□□□ -1.72
SCN1A-208ENST00000625916 KANSL2Q9H9L4 492 aa4.33□□□□□ -1.72
SCN1A-208ENST00000625916 KIAA1586Q9HCI6 787 aa4.33□□□□□ -1.72
SCN1A-208ENST00000625916 TESQ9UGI8 421 aaKnown RBP4.33□□□□□ -1.72
SCN1A-208ENST00000625916 EVLQ9UI08 416 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-208ENST00000625916 PRSS50Q9UI38 385 aa4.33□□□□□ -1.72
SCN1A-208ENST00000625916 KCNG1Q9UIX4 513 aa4.33□□□□□ -1.72
SCN1A-208ENST00000625916 ATP11BQ9Y2G3 1177 aa4.33□□□□□ -1.72
SCN1A-208ENST00000625916 PPP2R3BQ9Y5P8 575 aa4.33□□□□□ -1.72
SCN1A-208ENST00000625916 INO80B-WBP1J3KQ70 363 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 CDKL5O76039 1030 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 FOSP01100 380 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-208ENST00000625916 KRTAP10-11P60412 298 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 OCRLQ01968 901 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 MEF2AQ02078 507 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-208ENST00000625916 C21orf62-AS1Q17RA5 79 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 BMT2Q1RMZ1 405 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 SPDYE7PQ495Y7 208 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 C19orf54Q5BKX5 351 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 ARMC6Q6NXE6 501 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 ABHD15Q6UXT9 468 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 OR14C36Q8NHC7 312 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 SNX33Q8WV41 574 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 RSAD2Q8WXG1 361 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 LRFN3Q9BTN0 628 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 DUSP26Q9BV47 211 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 INO80BQ9C086 356 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-208ENST00000625916 MTFR1LQ9H019 292 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.32□□□□□ -1.72
SCN1A-208ENST00000625916 GPRC5DQ9NZD1 345 aa4.32□□□□□ -1.72
SCN1A-208ENST00000625916 MARCH11A6NNE9 402 aa4.31□□□□□ -1.72
SCN1A-208ENST00000625916 RAB11FIP3O75154 756 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms