RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 LRRIQ1Q96JM4 1722 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 CALB2P22676 271 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 POLGP54098 1239 aaPredicted RBP9.43□□□□□ -0.9
VCL-206ENST00000623461 DCLK2Q8N568 766 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 SLC38A10Q9HBR0 1119 aa9.43□□□□□ -0.9
VCL-206ENST00000623461 TTC7AQ9ULT0 858 aaPredicted RBP9.43□□□□□ -0.9
VCL-206ENST00000623461 MEIS1O00470 390 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 PRKAB2O43741 272 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 ARSEP51690 589 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 RPS8P62241 208 aaKnown RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 ARHGEF16Q5VV41 709 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 ATP6V0A1Q93050 837 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 RBM15Q96T37 977 aaKnown RBP eCLIP9.42□□□□□ -0.92e-6■■■□□ 17.5
VCL-206ENST00000623461 SLC13A1Q9BZW2 595 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 VPS11Q9H270 941 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 KIAA1586Q9HCI6 787 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.42□□□□□ -0.91e-6■□□□□ 11
VCL-206ENST00000623461 THRAP3Q9Y2W1 955 aaKnown RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 GOLGA8MH3BSY2 632 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 UBOX5O94941 541 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 ITKQ08881 620 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 SFSWAPQ12872 951 aaKnown RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 DDB1Q16531 1140 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 SPDYCQ5MJ68 293 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 ATXN2LQ8WWM7 1075 aaKnown RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 JADE3Q92613 823 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 MED10Q9BTT4 135 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 ZWILCHQ9H900 591 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 ASNSD1Q9NWL6 643 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 SETD1BQ9UPS6 1966 aaKnown RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 ATP2B4P23634 1241 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 AP3B2Q13367 1082 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 TXNRD1Q16881 649 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 WLSQ5T9L3 541 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 LVRNQ6Q4G3 990 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 PPP2R3CQ969Q6 453 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 ZFRQ96KR1 1074 aaKnown RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 STK33Q9BYT3 514 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 KLHL4Q9C0H6 718 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 SKAP2O75563 359 aaPredicted RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 ELF3P78545 371 aaPredicted RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 PLD3Q8IV08 490 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 DNAJC10Q8IXB1 793 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 RCOR2Q8IZ40 523 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 TMEM35BQ8NCS4 154 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 EML4Q9HC35 981 aaKnown RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 PIH1D3Q9NQM4 214 aaKnown RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 NRBP2Q9NSY0 501 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 GIMAP4Q9NUV9 329 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 CLPTM1O96005 669 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 CENPCQ03188 943 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 GLYCTKQ8IVS8 523 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 ACAP3Q96P50 834 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 GTSE1Q9NYZ3 720 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 HAO1Q9UJM8 370 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 PXDNLA1KZ92 1463 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 PPP1R3GB7ZBB8 358 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 TMEM253P0C7T8 217 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 FIGNQ5HY92 759 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 FOXR1Q6PIV2 292 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 PRPF39Q86UA1 669 aaKnown RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 ACTRT1Q8TDG2 376 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 SYBUQ9NX95 663 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 CORO1CQ9ULV4 474 aaPredicted RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 MROH7-TTC4A0A0A0MT08 1334 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 ADAMTS2O95450 1211 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 KRT16P08779 473 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 BTDP43251 543 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 INAQ16352 499 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 SFR1Q86XK3 245 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 AENQ8WTP8 325 aaKnown RBP9.42□□□□□ -0.9
VCL-206ENST00000623461 ACSBG1Q96GR2 724 aa9.42□□□□□ -0.9
VCL-206ENST00000623461 A0A1B0GW55 424 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 ZNF233A6NK53 670 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 HNRNPRO43390 633 aaKnown RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 LDHAP00338 332 aaKnown RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 DUX4L2P0CJ85 424 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 DUX4L3P0CJ86 424 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 DUX4L4P0CJ87 422 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 DUX4L5P0CJ88 424 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 DUX4L6P0CJ89 424 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 DUX4L7P0CJ90 424 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 YY1P25490 414 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 FNTAP49354 379 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 GALCP54803 685 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 KIF22Q14807 665 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 CC2D2BQ6DHV5 1058 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 CNBD1Q8NA66 436 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 GIMAP8Q8ND71 665 aaPredicted RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 HSPH1Q92598 858 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 CNBD2Q96M20 576 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 CDCA7Q9BWT1 371 aaPredicted RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 MRPL1Q9BYD6 325 aaKnown RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 BTBD7Q9P203 1132 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 DUX4Q9UBX2 424 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 CNOT7Q9UIV1 285 aaKnown RBP9.41□□□□□ -0.9
VCL-206ENST00000623461 LRRIQ4A6NIV6 560 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 ATP4AP20648 1035 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 ROR1Q01973 937 aa9.41□□□□□ -0.9
VCL-206ENST00000623461 SCUBE1Q8IWY4 988 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms