RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PNMA2Q9UL42 364 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 CSADQ9Y600 493 aa11.47□□□□□ -0.57
CUX1-221ENST00000622516 KRIT1O00522 736 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 ATP2A1O14983 1001 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 CHRNB2P17787 502 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 UBA1P22314 1058 aaKnown RBP11.46□□□□□ -0.57
CUX1-221ENST00000622516 LIG4P49917 911 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 ALDH5A1P51649 535 aaPredicted RBP11.46□□□□□ -0.57
CUX1-221ENST00000622516 NLRP11P59045 1033 aaKnown RBP11.46□□□□□ -0.57
CUX1-221ENST00000622516 DCAF12L1Q5VU92 463 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 SPOPLQ6IQ16 392 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 TRIM50Q86XT4 487 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 EPS8L1Q8TE68 723 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 ZNF516Q92618 1163 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 DCPSQ96C86 337 aaKnown RBP11.46□□□□□ -0.57
CUX1-221ENST00000622516 IFT74Q96LB3 600 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 FAM204AQ9H8W3 233 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 RNF181Q9P0P0 153 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 AMFRQ9UKV5 643 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 SYNGAP1Q96PV0 1343 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 GOLGA6BA6NDN3 693 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 SOWAHBA6NEL2 793 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 TTLL13PA6NNM8 815 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 FGGP02679 453 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 EDN1P05305 212 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 TMEM253P0C7T8 217 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 CCDC172P0C7W6 258 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 ZBTB48P10074 688 aaPredicted RBP11.46□□□□□ -0.57
CUX1-221ENST00000622516 KRT5P13647 590 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 TNNI1P19237 187 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 CYP2C19P33261 490 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 MARCKSL1P49006 195 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 CYP24A1Q07973 514 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 SKIDA1Q1XH10 827 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 LBX2Q6XYB7 198 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 SLFN11Q7Z7L1 901 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 CDHR1Q96JP9 859 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 HAPLN2Q9GZV7 340 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 TXNRD2Q9NNW7 524 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 RAB20Q9NX57 234 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 STXBP5LQ9Y2K9 1186 aa11.46□□□□□ -0.57
CUX1-221ENST00000622516 MESDQ14696 234 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 Q3C1V9 767 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 XKR3Q5GH77 459 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 GPD1LQ8N335 351 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 FBXL13Q8NEE6 735 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 MCPH1Q8NEM0 835 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 RDM1Q8NG50 284 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 HELQQ8TDG4 1101 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 LMBR1Q8WVP7 490 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 ALG3Q92685 438 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 TIPINQ9BVW5 301 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 TARS2Q9BW92 718 aaKnown RBP11.46□□□□□ -0.58
CUX1-221ENST00000622516 TRIM31Q9BZY9 425 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 FHDC1Q9C0D6 1143 aaPredicted RBP11.46□□□□□ -0.58
CUX1-221ENST00000622516 RNF14Q9UBS8 474 aa11.46□□□□□ -0.58
CUX1-221ENST00000622516 PTPRJQ12913 1337 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 ANKRD62A6NC57 917 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 SART1O43290 800 aaKnown RBP11.45□□□□□ -0.58
CUX1-221ENST00000622516 GLRA2P23416 452 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 MKRN4PQ13434 485 aaPredicted RBP11.45□□□□□ -0.58
CUX1-221ENST00000622516 HLTFQ14527 1009 aaKnown RBP eCLIP11.45□□□□□ -0.58
CUX1-221ENST00000622516 DNAJC21Q5F1R6 531 aaKnown RBP11.45□□□□□ -0.58
CUX1-221ENST00000622516 LLGL2Q6P1M3 1020 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 IFT20Q8IY31 132 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 SPIRE2Q8WWL2 714 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 KRT35Q92764 455 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 HES6Q96HZ4 224 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 PCYT2Q99447 389 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.45□□□□□ -0.581e-6■■■□□ 15.3
CUX1-221ENST00000622516 SPATC1LQ9H0A9 340 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 TMEM8AQ9HCN3 771 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 ALG6Q9Y672 507 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 GSTTP1A0A1W2PQM5 241 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 PGRMC1O00264 195 aaKnown RBP11.45□□□□□ -0.58
CUX1-221ENST00000622516 OATP04181 439 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 ERVK-9P63128 1117 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 PPATQ06203 517 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 NOL9Q5SY16 702 aaKnown RBP11.45□□□□□ -0.58
CUX1-221ENST00000622516 FAM71AQ8IYT1 594 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 PBKQ96KB5 322 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 ARHGAP28Q9P2N2 729 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 SUCLA2Q9P2R7 463 aaPredicted RBP11.45□□□□□ -0.58
CUX1-221ENST00000622516 FBXO40Q9UH90 709 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 NOCTQ9UK39 431 aaKnown RBP11.45□□□□□ -0.58
CUX1-221ENST00000622516 INTUQ9ULD6 942 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 LCTP09848 1927 aa11.45□□□□□ -0.58
CUX1-221ENST00000622516 NFASCO94856 1347 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 A0A0A6YYK5 440 aaPredicted RBP11.44□□□□□ -0.58
CUX1-221ENST00000622516 K7ERI5 159 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 ECM2O94769 699 aaPredicted RBP11.44□□□□□ -0.58
CUX1-221ENST00000622516 ARIH2O95376 493 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 GGPS1O95749 300 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 CYP11B1P15538 503 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 ANXA13P27216 316 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 MFAP3P55082 362 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 BIRC3Q13489 604 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 SYCE1Q8N0S2 351 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 FAM71BQ8TC56 605 aa11.44□□□□□ -0.58
CUX1-221ENST00000622516 SCFD2Q8WU76 684 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms