RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 SPTLC1O15269 473 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 RNF113AO15541 343 aaKnown RBP8.44□□□□□ -1.06
VPS11-209ENST00000622309 PDGFRBP09619 1106 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 SNRPA1P09661 255 aaKnown RBP8.44□□□□□ -1.06
VPS11-209ENST00000622309 S100A1P23297 94 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 KLRC1P26715 233 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 ATP5DP30049 168 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 ATICP31939 592 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 CCR3P51677 355 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 PMS1P54277 932 aaKnown RBP8.44□□□□□ -1.06
VPS11-209ENST00000622309 RFWD3Q6PCD5 774 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 APOA5Q6Q788 366 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 BTNL9Q6UXG8 535 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 NELFCDQ8IXH7 590 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 PEX5LQ8IYB4 626 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.44□□□□□ -1.06
VPS11-209ENST00000622309 NELL1Q92832 810 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 BHMTQ93088 406 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 DCAF5Q96JK2 942 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 DNAI2Q9GZS0 605 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 IFT122Q9HBG6 1241 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 FAM196BA6NMK8 535 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 NEURL1BA8MQ27 555 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 UBE2Q2LH0YL09 131 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 TXKP42681 527 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 WASHC5Q12768 1159 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 KCTD2Q14681 263 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 SLC9C1Q4G0N8 1177 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 KLHL35Q6PF15 583 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 DSTYKQ6XUX3 929 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 ANKLE1Q8NAG6 615 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 FNBP1Q96RU3 617 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 TRIM51Q9BSJ1 452 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 TCP11L1Q9NUJ3 509 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 USP40Q9NVE5 1235 aa8.44□□□□□ -1.06
VPS11-209ENST00000622309 A0A087WZG4 1122 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 SPECC1L-ADORA2AF8WAN1 911 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 DKC1O60832 514 aaKnown RBP eCLIP8.43□□□□□ -1.06
VPS11-209ENST00000622309 CBFA2T3O75081 653 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 OR6B1O95007 311 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 BMP15O95972 392 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 VDRP11473 427 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 KRT72Q14CN4 511 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 ACSBG2Q5FVE4 666 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 ZNF362Q5T0B9 420 aaPredicted RBP8.43□□□□□ -1.06
VPS11-209ENST00000622309 RC3H1Q5TC82 1133 aaKnown RBP8.43□□□□□ -1.06
VPS11-209ENST00000622309 C1orf228Q6PIY5 440 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 UNC13DQ70J99 1090 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 KBTBD2Q8IY47 623 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 SCAIQ8N9R8 606 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 ZNF784Q8NCA9 323 aaPredicted RBP8.43□□□□□ -1.06
VPS11-209ENST00000622309 GAB3Q8WWW8 586 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 MYL10Q9BUA6 226 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 STK33Q9BYT3 514 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 NDEL1Q9GZM8 345 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 NLRC4Q9NPP4 1024 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 KRT82Q9NSB4 513 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 STK32BQ9NY57 414 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 MTRF1LQ9UGC7 380 aaKnown RBP8.43□□□□□ -1.06
VPS11-209ENST00000622309 CNOT7Q9UIV1 285 aaKnown RBP8.43□□□□□ -1.06
VPS11-209ENST00000622309 TRPM3Q9HCF6 1732 aaPredicted RBP8.43□□□□□ -1.06
VPS11-209ENST00000622309 USP54Q70EL1 1684 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 ALS2Q96Q42 1657 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 CPDO75976 1380 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 SSU72P8A0A1W2PR75 194 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 MATN2O00339 956 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 DDX3XO00571 662 aaKnown RBP eCLIP8.43□□□□□ -1.069e-7■□□□□ 10
VPS11-209ENST00000622309 HNRNPCL1O60812 293 aaKnown RBP8.43□□□□□ -1.06
VPS11-209ENST00000622309 TPPPO94811 219 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 FGAP02671 866 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 ITGA4P13612 1032 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 VPS41P49754 854 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 YARSP54577 528 aaKnown RBP8.43□□□□□ -1.06
VPS11-209ENST00000622309 FKBP4Q02790 459 aaKnown RBP eCLIP8.43□□□□□ -1.06
VPS11-209ENST00000622309 AUHQ13825 339 aaKnown RBP8.43□□□□□ -1.06
VPS11-209ENST00000622309 ARHGEF18Q6ZSZ5 1173 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 SCYL3Q8IZE3 742 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 ECSITQ9BQ95 431 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 BHMT2Q9H2M3 363 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 HESX1Q9UBX0 185 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 TBK1Q9UHD2 729 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 CHKBQ9Y259 395 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 HBS1LQ9Y450 684 aaKnown RBP8.43□□□□□ -1.06
VPS11-209ENST00000622309 MYPNQ86TC9 1320 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 STK36Q9NRP7 1315 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 CACNA1FO60840 1977 aa8.43□□□□□ -1.06
VPS11-209ENST00000622309 MYH2Q9UKX2 1941 aa8.42□□□□□ -1.06
VPS11-209ENST00000622309 BICDL2A1A5D9 508 aa8.42□□□□□ -1.06
VPS11-209ENST00000622309 SPDYE16A6NNV3 312 aaPredicted RBP8.42□□□□□ -1.06
VPS11-209ENST00000622309 TIMM10P62072 90 aa8.42□□□□□ -1.06
VPS11-209ENST00000622309 MED21Q13503 144 aa8.42□□□□□ -1.06
VPS11-209ENST00000622309 GCKRQ14397 625 aa8.42□□□□□ -1.06
VPS11-209ENST00000622309 RBM44Q6ZP01 1051 aaKnown RBP8.42□□□□□ -1.06
VPS11-209ENST00000622309 CCDC84Q86UT8 332 aaPredicted RBP8.42□□□□□ -1.06
VPS11-209ENST00000622309 ANKS1AQ92625 1134 aa8.42□□□□□ -1.06
VPS11-209ENST00000622309 MAGEB18Q96M61 343 aa8.42□□□□□ -1.06
VPS11-209ENST00000622309 TXLNGYQ9BZA5 131 aa8.42□□□□□ -1.06
VPS11-209ENST00000622309 AS3MTQ9HBK9 375 aa8.42□□□□□ -1.06
VPS11-209ENST00000622309 KDM3BQ7LBC6 1761 aa8.42□□□□□ -1.06
VPS11-209ENST00000622309 WDR19Q8NEZ3 1342 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms