RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 OR52Z1P0C646 297 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 ATP2B1P20020 1258 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 AMHR2Q16671 573 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 PIGOQ8TEQ8 1089 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 STAMQ92783 540 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 ADPGKQ9BRR6 497 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 VN1R3Q9BXE9 311 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 EIF2AQ9BY44 585 aaKnown RBP13.2□□□□□ -0.3
UPF3B-204ENST00000619445 PLEKHA4Q9H4M7 779 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 NOL7Q9UMY1 257 aaKnown RBP13.2□□□□□ -0.3
UPF3B-204ENST00000619445 PRG3Q9Y2Y8 225 aaPredicted RBP13.2□□□□□ -0.3
UPF3B-204ENST00000619445 KIF3AQ9Y496 699 aa13.2□□□□□ -0.3
UPF3B-204ENST00000619445 DENND4AQ7Z401 1863 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 PHLPP2Q6ZVD8 1323 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 ARHGEF35A5YM69 484 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 N4BP3O15049 544 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 GLUD1P00367 558 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 SPATA31C1P0DKV0 1188 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 MRE11P49959 708 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 SCNN1GP51170 649 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 EFNA5P52803 228 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 DSG1Q02413 1049 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 MAPK6Q16659 721 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 USP41Q3LFD5 358 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 CDCA2Q69YH5 1023 aaPredicted RBP13.19□□□□□ -0.3
UPF3B-204ENST00000619445 TMC5Q6UXY8 1006 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 ALYREFQ86V81 257 aaKnown RBP13.19□□□□□ -0.3
UPF3B-204ENST00000619445 CATSPER3Q86XQ3 398 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 RNF168Q8IYW5 571 aaPredicted RBP13.19□□□□□ -0.3
UPF3B-204ENST00000619445 FAM184AQ8NB25 1140 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 FBXO18Q8NFZ0 1043 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 CPB2Q96IY4 423 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 RXFP1Q9HBX9 757 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 FNIP2Q9P278 1114 aa13.19□□□□□ -0.3
UPF3B-204ENST00000619445 MTCL1Q9Y4B5 1905 aaKnown RBP13.18□□□□□ -0.3
UPF3B-204ENST00000619445 KMT2EQ8IZD2 1858 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 B4GALT3O60512 393 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 SSBP05455 408 aaKnown RBP eCLIP13.18□□□□□ -0.3
UPF3B-204ENST00000619445 CYP11B2P19099 503 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 SP100P23497 879 aaPredicted RBP13.18□□□□□ -0.3
UPF3B-204ENST00000619445 AVPR2P30518 371 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 NAMPTP43490 491 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 AFF1P51825 1210 aaKnown RBP13.18□□□□□ -0.3
UPF3B-204ENST00000619445 ELAVL2Q12926 359 aaKnown RBP13.18□□□□□ -0.3
UPF3B-204ENST00000619445 TMEM132AQ24JP5 1023 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 KIAA0319Q5VV43 1072 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 PDXDC1Q6P996 788 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 NOSTRINQ8IVI9 506 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 C12orf76Q8N812 135 aaPredicted RBP13.18□□□□□ -0.3
UPF3B-204ENST00000619445 IFT74Q96LB3 600 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 TMEM60Q9H2L4 133 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 FZD8Q9H461 694 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 NXF3Q9H4D5 531 aaKnown RBP13.18□□□□□ -0.3
UPF3B-204ENST00000619445 MAN1C1Q9NR34 630 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 CHST7Q9NS84 486 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 MARCH5Q9NX47 278 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 IGSF9Q9P2J2 1179 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 ADAM28Q9UKQ2 775 aa13.18□□□□□ -0.3
UPF3B-204ENST00000619445 WDFY4Q6ZS81 3184 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 SF3B1O75533 1304 aaKnown RBP eCLIP13.17□□□□□ -0.35e-6■■■■■ 61.2
UPF3B-204ENST00000619445 LAD1O00515 517 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 C2CD2LO14523 706 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 TEX28O15482 410 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 NPTXRO95502 500 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 EFEMP2O95967 443 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 FXR2P51116 673 aaKnown RBP eCLIP13.17□□□□□ -0.3
UPF3B-204ENST00000619445 FOSBP53539 338 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 TUSC3Q13454 348 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 PRPF4BQ13523 1007 aaKnown RBP13.17□□□□□ -0.3
UPF3B-204ENST00000619445 PDIA5Q14554 519 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 TTC38Q5R3I4 469 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 FUT10Q6P4F1 479 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 PADI6Q6TGC4 694 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 DEPTORQ8TB45 409 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 KIFAP3Q92845 792 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 NXPE3Q969Y0 559 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 ZFP42Q96MM3 310 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 APOL6Q9BWW8 343 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 RNF39Q9H2S5 420 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 ZDHHC7Q9NXF8 308 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 PARP2Q9UGN5 583 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 HES2Q9Y543 173 aa13.17□□□□□ -0.3
UPF3B-204ENST00000619445 ACKR2O00590 384 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 DTNBO60941 627 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 MED24O75448 989 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 TADA2AO75478 443 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 PAPLNO95428 1278 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 BRD1O95696 1058 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 TDGQ13569 410 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 HSP90AA2PQ14568 343 aaPredicted RBP13.16□□□□□ -0.3
UPF3B-204ENST00000619445 DCAF4L1Q3SXM0 396 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 CCDC83Q8IWF9 413 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 MFSD1Q9H3U5 465 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 LIMD1Q9UGP4 676 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 KCNG1Q9UIX4 513 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 C2orf16Q68DN1 1984 aa13.16□□□□□ -0.3
UPF3B-204ENST00000619445 CCDC195A0A1B0GUA6 201 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 WNT7AO00755 349 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 B4GALT5O43286 388 aa13.15□□□□□ -0.3
UPF3B-204ENST00000619445 PRKCBP05771 671 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms