RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 C1orf228Q6PIY5 440 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 MMS22LQ6ZRQ5 1243 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 ZNF571Q7Z3V5 609 aaPredicted RBP9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 HAS1Q92839 578 aa9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 JPH2Q9BR39 696 aaPredicted RBP9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 DIS3Q9Y2L1 958 aaKnown RBP9.54□□□□□ -0.88
PDLIM5-222ENST00000615540 PGM5Q15124 567 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 BBOF1Q8ND07 529 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 RILPQ96NA2 401 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 TEX13BQ9BXU2 312 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 ANKZF1Q9H8Y5 726 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 SCINQ9Y6U3 715 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 SRCAPQ6ZRS2 3230 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 KLRC4O43908 158 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 SLITRK3O94933 977 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 ALDH3A1P30838 453 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 TCF7P36402 384 aaPredicted RBP9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 PHKA2P46019 1235 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 RAP1GAPP47736 663 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 ACTR2P61160 394 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 BEND6Q5SZJ8 279 aaPredicted RBP9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 CROCCP2Q86T23 111 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 TACO1Q9BSH4 297 aaKnown RBP9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 HOMER3Q9NSC5 361 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 FBXO40Q9UH90 709 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 BAIAP2L1Q9UHR4 511 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 EXOC1LA0A1B0GW35 172 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 CARSP49589 748 aaKnown RBP9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 BBS9Q3SYG4 887 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 MCEEQ96PE7 176 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 CYP26B1Q9NR63 512 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 LCP1P13796 627 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 GEN1Q17RS7 908 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 SPOPLQ6IQ16 392 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 ARHGEF19Q8IW93 802 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 C4orf32Q8N8J7 132 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 CASKIN2Q8WXE0 1202 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 HEY1Q9Y5J3 304 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 SSU72P8A0A1W2PR75 194 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 A6NNZ2 444 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 WNT10BO00744 389 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 WEE2P0C1S8 567 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 SCP2P22307 547 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 ABCD1P33897 745 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 PSMC1P62191 440 aaKnown RBP9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 TUBB8Q3ZCM7 444 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 CCNI2Q6ZMN8 369 aaPredicted RBP9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 PLCD3Q8N3E9 789 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 FAM167AQ96KS9 214 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 FAM81BQ96LP2 452 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 L2HGDHQ9H9P8 463 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 OSGEPQ9NPF4 335 aa9.53□□□□□ -0.88
PDLIM5-222ENST00000615540 FOXN3O00409 490 aaPredicted RBP9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 SPAG7O75391 227 aa9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 COMTP21964 271 aa9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 BRD2P25440 801 aaKnown RBP9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 IRX4P78413 519 aa9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 EXOC8Q8IYI6 725 aa9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 TPCN2Q8NHX9 752 aa9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 LRRC8CQ8TDW0 803 aa9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 DHX38Q92620 1227 aaKnown RBP9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 FAF2Q96CS3 445 aa9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 FGFBP2Q9BYJ0 223 aa9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 WNT8AQ9H1J5 351 aa9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 IKZF4Q9H2S9 585 aa9.52□□□□□ -0.88
PDLIM5-222ENST00000615540 DUOX1Q9NRD9 1551 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 CCDC188H7C350 402 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 EPHB6O15197 1021 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 FGRP09769 529 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 MIIPQ5JXC2 388 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 SLC47A2Q86VL8 602 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 ANKMY2Q8IV38 441 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 WDR18Q9BV38 432 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 SPC25Q9HBM1 224 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 NGRNQ9NPE2 291 aaKnown RBP9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 LRRIQ3A6PVS8 624 aaPredicted RBP9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 HMGB1P1B2RPK0 211 aaPredicted RBP9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 TJP3O95049 919 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 PLA2G4AP47712 749 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 CENPPQ6IPU0 288 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 RIT2Q99578 217 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 KIAA1586Q9HCI6 787 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 KLHL14Q9P2G3 628 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 NUB1Q9Y5A7 615 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 CIB2O75838 187 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 CPP00450 1065 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 HLA-DRAP01903 254 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 OATP04181 439 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 GBP1P32455 592 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 MSH2P43246 934 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 MTM1Q13496 603 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 SLMAPQ14BN4 828 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 PCNX4Q63HM2 1172 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 KIF12Q96FN5 646 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 CPB2Q96IY4 423 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 SMYD2Q9NRG4 433 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 ABT1Q9ULW3 272 aaKnown RBP9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 ABCC6O95255 1503 aa9.52□□□□□ -0.89
PDLIM5-222ENST00000615540 FAM237AA0A1B0GTK4 181 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms