RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PGBD4Q96DM1 585 aa15.6■□□□□ 0.09
SHKBP1-217ENST00000598558 ZFP42Q96MM3 310 aa15.6■□□□□ 0.09
SHKBP1-217ENST00000598558 GAD1Q99259 594 aa15.6■□□□□ 0.09
SHKBP1-217ENST00000598558 RSAD1Q9HA92 442 aa15.6■□□□□ 0.09
SHKBP1-217ENST00000598558 KCNG1Q9UIX4 513 aa15.6■□□□□ 0.09
SHKBP1-217ENST00000598558 INPP5FQ9Y2H2 1132 aa15.6■□□□□ 0.09
SHKBP1-217ENST00000598558 CHD7Q9P2D1 2997 aa15.6■□□□□ 0.09
SHKBP1-217ENST00000598558 INPPL1O15357 1258 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 PIGRP01833 764 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 HOXD13P35453 343 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 AMPD3Q01432 767 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 TMEM132AQ24JP5 1023 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 MAP4K3Q8IVH8 894 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 CEP57L1Q8IYX8 460 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 CNNM3Q8NE01 707 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 NRDE2Q9H7Z3 1164 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 MRPL44Q9H9J2 332 aaKnown RBP15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 MAGEF1Q9HAY2 307 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 OLFML3Q9NRN5 406 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 TBC1D13Q9NVG8 400 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 RNF216Q9NWF9 866 aaPredicted RBP15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 SEL1LQ9UBV2 794 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 PARP2Q9UGN5 583 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 PLAGL2Q9UPG8 496 aa15.59■□□□□ 0.09
SHKBP1-217ENST00000598558 ARL5CA6NH57 179 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 C5orf67F2Z3F1 127 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 GRM6O15303 877 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 HOXA2O43364 376 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 TOM1L1O75674 476 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 PRPF6O94906 941 aaKnown RBP15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 POMCP01189 267 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 DNAJB1P25685 340 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 CTNNB1P35222 781 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 MLH1P40692 756 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 SCNN1GP51170 649 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 OSTNP61366 133 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 STRN3Q13033 797 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 ZBTB41Q5SVQ8 909 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 GLB1LQ6UWU2 654 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 MPZL3Q6UWV2 235 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 ZPBP2Q6X784 338 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 UNC13DQ70J99 1090 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 CCDC65Q8IXS2 484 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 COLGALT1Q8NBJ5 622 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 TMEM87AQ8NBN3 555 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 FBXO22Q8NEZ5 403 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 PYM1Q9BRP8 204 aaKnown RBP15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 TRIM6Q9C030 488 aaPredicted RBP15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 LRRC27Q9C0I9 530 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 DNAJB4Q9UDY4 337 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 USP25Q9UHP3 1055 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 GDAQ9Y2T3 454 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 GIT1Q9Y2X7 761 aa15.58■□□□□ 0.08
SHKBP1-217ENST00000598558 CDH23Q9H251 3354 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 TCHHQ07283 1943 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 NT5C1B-RDH14C9J2C7 533 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 H0YCG3 227 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 H3BNC9 293 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 PTGESO14684 152 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 GTPBP6O43824 516 aaPredicted RBP15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 FAM189A1O60320 539 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 NR1I2O75469 434 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 RECQL4O94761 1208 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 GCNT3O95395 438 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 ITGB1P05556 798 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 MCF2P10911 925 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 HARSP12081 509 aaKnown RBP15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 ADSSP30520 456 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 MCL1Q07820 350 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 GPM6BQ13491 265 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 CAMK1Q14012 370 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 ZNF568Q3ZCX4 644 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 EPM2AIP1Q7L775 607 aaPredicted RBP15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 TMEM173Q86WV6 379 aaPredicted RBP15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 THNSL1Q8IYQ7 743 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 ABI1Q8IZP0 508 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 KLHL23Q8NBE8 558 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 ZSWIM2Q8NEG5 633 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 BCL7CQ8WUZ0 217 aaPredicted RBP15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 TCHPQ9BT92 498 aa15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 ALG13Q9NP73 1137 aaKnown RBP15.57■□□□□ 0.08
SHKBP1-217ENST00000598558 PVALEFA0A1B0GWK0 134 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 IGFBP6P24592 240 aaPredicted RBP15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 GRM5P41594 1212 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 DPYDQ12882 1025 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 NAB2Q15742 525 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 DCAF4L1Q3SXM0 396 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 KMT5BQ4FZB7 885 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 L1TD1Q5T7N2 865 aaKnown RBP15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 KCNT2Q6UVM3 1135 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 ALKAL1Q6UXT8 129 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 CLEC17AQ6ZS10 378 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 LRRC43Q8N309 656 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 TMEM130Q8N3G9 435 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 SPPL3Q8TCT6 385 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 ERCC4Q92889 916 aaPredicted RBP15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 SAMD11Q96NU1 681 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 ADPGKQ9BRR6 497 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 GBP3Q9H0R5 595 aa15.56■□□□□ 0.08
SHKBP1-217ENST00000598558 SLC39A2Q9NP94 309 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms