RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 GOLGA8JA6NMD2 632 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 GOLGA6L6A8MZA4 724 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 OGTO15294 1046 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 CSDE1O75534 798 aaKnown RBP16.83■□□□□ 0.28
UPF1-206ENST00000598471 IQCF3P0C7M6 154 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 MCF2P10911 925 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 HARSP12081 509 aaKnown RBP16.83■□□□□ 0.28
UPF1-206ENST00000598471 ARF4P18085 180 aaPredicted RBP16.83■□□□□ 0.28
UPF1-206ENST00000598471 PROZP22891 400 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 ENPEPQ07075 957 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 MGAT3Q09327 533 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 BFSP1Q12934 665 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 TRIP12Q14669 1992 aaPredicted RBP16.83■□□□□ 0.28
UPF1-206ENST00000598471 NR1I3Q14994 352 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 DCAF4L1Q3SXM0 396 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 DCAF17Q5H9S7 520 aaPredicted RBP16.83■□□□□ 0.28
UPF1-206ENST00000598471 TCERG1LQ5VWI1 586 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 NOTUMQ6P988 496 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 ZBTB33Q86T24 672 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 RDH13Q8NBN7 331 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 WNT8BQ93098 351 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 CCDC51Q96ER9 411 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 ZBTB45Q96K62 511 aaPredicted RBP16.83■□□□□ 0.28
UPF1-206ENST00000598471 FAM213AQ9BRX8 229 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 NDST4Q9H3R1 872 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 PDZD7Q9H5P4 517 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 A0A1B0GUA9 196 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 TTLL13PA6NNM8 815 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 STX10O60499 249 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 RPS6KA5O75582 802 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 FGFR4P22455 802 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 UBXN1Q04323 297 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 BFSP2Q13515 415 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 TRIM71Q2Q1W2 868 aaKnown RBP16.82■□□□□ 0.28
UPF1-206ENST00000598471 FAM26DQ5JW98 314 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 SLC39A5Q6ZMH5 540 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 CBWD2Q8IUF1 395 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 FAM126BQ8IXS8 530 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 USP38Q8NB14 1042 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 DHX38Q92620 1227 aaKnown RBP16.82■□□□□ 0.28
UPF1-206ENST00000598471 CPB2Q96IY4 423 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 PTPRHQ9HD43 1115 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 AGPAT5Q9NUQ2 364 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 PIN4Q9Y237 131 aaKnown RBP16.82■□□□□ 0.28
UPF1-206ENST00000598471 SQORQ9Y6N5 450 aa16.82■□□□□ 0.28
UPF1-206ENST00000598471 DCDC2CA8MYV0 355 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 GPR182O15218 404 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 CHRNA1P02708 482 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 AFPP02771 609 aaKnown RBP16.81■□□□□ 0.28
UPF1-206ENST00000598471 VAMP7P51809 220 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 RBL2Q08999 1139 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 MIIPQ5JXC2 388 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 EEF1DP3Q658K8 133 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 SLC27A1Q6PCB7 646 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 TMC2Q8TDI7 906 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 DIS3LQ8TF46 1054 aaKnown RBP16.81■□□□□ 0.28
UPF1-206ENST00000598471 TMEM40Q8WWA1 233 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 BORCS6Q96GS4 357 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 CDT1Q9H211 546 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 C11orf49Q9H6J7 331 aa16.81■□□□□ 0.28
UPF1-206ENST00000598471 RBAKQ9NYW8 714 aaPredicted RBP16.81■□□□□ 0.28
UPF1-206ENST00000598471 NOC2LQ9Y3T9 749 aaKnown RBP16.81■□□□□ 0.28
UPF1-206ENST00000598471 A0A1W2PQC6 194 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 ABLIM1O14639 778 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 PQBP1O60828 265 aaKnown RBP16.8■□□□□ 0.28
UPF1-206ENST00000598471 N4BP1O75113 896 aaKnown RBP16.8■□□□□ 0.28
UPF1-206ENST00000598471 CD4P01730 458 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 ADRB2P07550 413 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 COL6A1P12109 1028 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 CKBP12277 381 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 ACOT2P49753 483 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 ATN1P54259 1190 aaPredicted RBP16.8■□□□□ 0.28
UPF1-206ENST00000598471 CYP24A1Q07973 514 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 KCNH2Q12809 1159 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 SURF1Q15526 300 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 FBXO47Q5MNV8 452 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 C1orf53Q5VUE5 145 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 ANKRD33Q7Z3H0 272 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 UBE2Q1Q7Z7E8 422 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 FAM228AQ86W67 206 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 VSTM4Q8IW00 320 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 SLC35C1Q96A29 364 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 PAWRQ96IZ0 340 aaKnown RBP16.8■□□□□ 0.28
UPF1-206ENST00000598471 PDLIM2Q96JY6 352 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 MFSD14AQ96MC6 490 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 TOX2Q96NM4 488 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 FNBP1Q96RU3 617 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 HAPLN2Q9GZV7 340 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 INTS13Q9NVM9 706 aa16.8■□□□□ 0.28
UPF1-206ENST00000598471 TEX33O43247 280 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 CLTAP09496 248 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 SELPP16109 830 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 POU5F1Q01860 360 aaKnown RBP16.79■□□□□ 0.28
UPF1-206ENST00000598471 PAK2Q13177 524 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 PSMD6Q15008 389 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 ZNF618Q5T7W0 954 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 SPECC1LQ69YQ0 1117 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 TMC6Q7Z403 805 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 NECAB2Q7Z6G3 386 aa16.79■□□□□ 0.28
UPF1-206ENST00000598471 CDR2LQ86X02 465 aaPredicted RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms