RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 HCSTQ9UBK5 93 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 SLC4A7Q9Y6M7 1214 aa11.6□□□□□ -0.55
LIG1-210ENST00000596332 ZBBXA8MT70 800 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 PPP1R3GB7ZBB8 358 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 H0YCG3 227 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 OFD1O75665 1012 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 NPTXRO95502 500 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 FGFR1P11362 822 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 ATP2A2P16615 1042 aaKnown RBP11.59□□□□□ -0.55
LIG1-210ENST00000596332 ZCWPW2Q504Y3 356 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 SEZ6Q53EL9 994 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 ISM2Q6H9L7 571 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 TWF2Q6IBS0 349 aaKnown RBP11.59□□□□□ -0.55
LIG1-210ENST00000596332 MPZL3Q6UWV2 235 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 NPAS4Q8IUM7 802 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 MYOCDQ8IZQ8 938 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 SLC17A8Q8NDX2 589 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 TMEM174Q8WUU8 243 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 SLC9A7Q96T83 725 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 PBX4Q9BYU1 374 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 GZF1Q9H116 711 aaPredicted RBP11.59□□□□□ -0.55
LIG1-210ENST00000596332 SEMA6BQ9H3T3 888 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 PCDHB13Q9Y5F0 798 aa11.59□□□□□ -0.55
LIG1-210ENST00000596332 CHD7Q9P2D1 2997 aa11.58□□□□□ -0.55
LIG1-210ENST00000596332 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.58□□□□□ -0.56
LIG1-210ENST00000596332 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.58□□□□□ -0.56
LIG1-210ENST00000596332 N4BP3O15049 544 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 UPP2O95045 317 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 AMHP03971 560 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 MCF2P10911 925 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 AKAP5P24588 427 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 TNFSF9P41273 254 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 PRCPP42785 496 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 PMS1P54277 932 aaKnown RBP11.58□□□□□ -0.56
LIG1-210ENST00000596332 MCCD1P59942 119 aaPredicted RBP11.58□□□□□ -0.56
LIG1-210ENST00000596332 ALCAMQ13740 583 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 KNOP1Q1ED39 458 aaKnown RBP11.58□□□□□ -0.56
LIG1-210ENST00000596332 SLC10A6Q3KNW5 377 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 FAM117BQ6P1L5 589 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 ZBTB33Q86T24 672 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 ADSSL1Q8N142 457 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 TMEM130Q8N3G9 435 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 ACCSQ96QU6 501 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 CBWD1Q9BRT8 395 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 CWH43Q9H720 699 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 EXOC1Q9NV70 894 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 DMAC2Q9NW81 257 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 SNTG2Q9NY99 539 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 PLAGL2Q9UPG8 496 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 MAPK8IP1Q9UQF2 711 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 TRIOBPQ9H2D6 2365 aa11.58□□□□□ -0.56
LIG1-210ENST00000596332 PTGESO14684 152 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 IGFBP6P24592 240 aaPredicted RBP11.57□□□□□ -0.56
LIG1-210ENST00000596332 GRM5P41594 1212 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 KCNJ6P48051 423 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 RAB27AP51159 221 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 SMAD3P84022 425 aaKnown RBP11.57□□□□□ -0.56
LIG1-210ENST00000596332 STRN3Q13033 797 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 ZNF658Q5TYW1 1059 aaPredicted RBP11.57□□□□□ -0.56
LIG1-210ENST00000596332 SCARA3Q6AZY7 606 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 CENPPQ6IPU0 288 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 NELFCDQ8IXH7 590 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 GUF1Q8N442 669 aaKnown RBP11.57□□□□□ -0.56
LIG1-210ENST00000596332 SMARCE1Q969G3 411 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 FBXL18Q96ME1 805 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 ZMAT2Q96NC0 199 aaKnown RBP11.57□□□□□ -0.56
LIG1-210ENST00000596332 RAD9AQ99638 391 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 AGPAT3Q9NRZ7 376 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 CPSF3Q9UKF6 684 aaKnown RBP11.57□□□□□ -0.56
LIG1-210ENST00000596332 TRAF3IP3Q9Y228 551 aa11.57□□□□□ -0.56
LIG1-210ENST00000596332 SZT2Q5T011 3432 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 TTC26A0AVF1 554 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 LINC01553A4QN01 128 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 BIN1O00499 593 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 HNRNPDLO14979 420 aaKnown RBP11.56□□□□□ -0.56
LIG1-210ENST00000596332 CLDN3O15551 220 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 DDHD2O94830 711 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 STAG3L1P0CL83 205 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 ABCD1P33897 745 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 LIG4P49917 911 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 NFKBIBQ15653 356 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 ZBTB6Q15916 424 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 ENOX2Q16206 610 aaKnown RBP11.56□□□□□ -0.56
LIG1-210ENST00000596332 DCAF4L1Q3SXM0 396 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 ZNF568Q3ZCX4 644 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 HABP4Q5JVS0 413 aaKnown RBP11.56□□□□□ -0.56
LIG1-210ENST00000596332 ZNF280BQ86YH2 543 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 C12orf56Q8IXR9 622 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 ZC3H3Q8IXZ2 948 aaKnown RBP11.56□□□□□ -0.56
LIG1-210ENST00000596332 THNSL1Q8IYQ7 743 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 PLEKHO2Q8TD55 490 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 HELQQ8TDG4 1101 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 LRCH3Q96II8 777 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 ZFP42Q96MM3 310 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 GAD1Q99259 594 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 GBP3Q9H0R5 595 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 TMEM206Q9H813 350 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 KLK14Q9P0G3 267 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 PCDHB7Q9Y5E2 793 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 PCDHA11Q9Y5I1 949 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms