RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 SSX2IPQ9Y2D8 614 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 HES2Q9Y543 173 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 LINC01565O15544 149 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 DDHD2O94830 711 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 CTSAP10619 480 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 TXLNAP40222 546 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 SCNN1GP51170 649 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 SLC12A3P55017 1021 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 DSC1Q08554 894 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 MAPK7Q13164 816 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 SMAD2Q15796 467 aaKnown RBP19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 ATF7IP2Q5U623 682 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 FAM178BQ8IXR5 827 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 DAW1Q8N136 415 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 CASP10Q92851 521 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 MSLNLQ96KJ4 702 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 KIFC3Q9BVG8 833 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 RNF39Q9H2S5 420 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 MTMR6Q9Y217 621 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 TNFSF13BQ9Y275 285 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 PCDHGC5Q9Y5F6 944 aa19.52■□□□□ 0.72
SHKBP1-204ENST00000594862 C2orf71A6NGG8 1288 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 MBTPS2O43462 519 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 PLS3P13797 630 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 IL9P15248 144 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 HOXB8P17481 243 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 ABCD1P33897 745 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 STRN3Q13033 797 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 PPFIBP1Q86W92 1011 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 TMEM173Q86WV6 379 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 CDR2LQ86X02 465 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 COLGALT2Q8IYK4 626 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 SMRP1Q8NCR6 262 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 ZFP42Q96MM3 310 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 NTPCRQ9BSD7 190 aaKnown RBP19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 COLEC11Q9BWP8 271 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 CCSER1Q9C0I3 900 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 CLEC1BQ9P126 229 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 CCDC39Q9UFE4 941 aa19.51■□□□□ 0.71
SHKBP1-204ENST00000594862 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 HIDE1A8MVS5 230 aa19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 NRP1O14786 923 aa19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 PER2O15055 1255 aa19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 CXCL14O95715 111 aa19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 GLP2RO95838 553 aa19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 AKAP5P24588 427 aa19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 CA8P35219 290 aa19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 OR1G1P47890 313 aa19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 DLX2Q07687 328 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 PTPAQ15257 358 aa19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 CLIC4Q9Y696 253 aa19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 MYH11P35749 1972 aa19.5■□□□□ 0.71
SHKBP1-204ENST00000594862 B4GALT3O60512 393 aa19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 URODP06132 367 aa19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 AFF1P51825 1210 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 TUSC3Q13454 348 aa19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 ADHFE1Q8IWW8 467 aa19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 GJD3Q8N144 294 aa19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 PLIN2Q99541 437 aa19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 HERC2P3Q9BVR0 1158 aa19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 EMILIN2Q9BXX0 1053 aa19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 MRPL17Q9NRX2 175 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 TOPORSQ9NS56 1045 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 DZANK1Q9NVP4 752 aa19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 STK17AQ9UEE5 414 aa19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 BARX2Q9UMQ3 279 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 SRPRBQ9Y5M8 271 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-204ENST00000594862 RECQL4O94761 1208 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 SOD2P04179 222 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 KRT18P05783 430 aaKnown RBP19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 PLCG1P19174 1290 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 SSTR3P32745 418 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 YARSP54577 528 aaKnown RBP19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 KCNC3Q14003 757 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 CLUL1Q15846 466 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 ZNF568Q3ZCX4 644 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 TPRNQ4KMQ1 711 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 NT5DC1Q5TFE4 455 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 ELMSAN1Q6PJG2 1045 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 GPBP1Q86WP2 473 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 GPR65Q8IYL9 337 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 GSTCDQ8NEC7 633 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 BCL7CQ8WUZ0 217 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 LARP4BQ92615 738 aaKnown RBP19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 RAD54LQ92698 747 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 KCNN1Q92952 543 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 ZNF396Q96N95 335 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 CCDC94Q9BW85 323 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 FOXD4L1Q9NU39 408 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 SNTG2Q9NY99 539 aa19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 FBXO2Q9UK22 296 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 PRG3Q9Y2Y8 225 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-204ENST00000594862 MYH15Q9Y2K3 1946 aa19.47■□□□□ 0.71
SHKBP1-204ENST00000594862 TTLL13PA6NNM8 815 aa19.47■□□□□ 0.71
SHKBP1-204ENST00000594862 SLC16A4O15374 487 aa19.47■□□□□ 0.71
SHKBP1-204ENST00000594862 TBCAO75347 108 aaKnown RBP19.47■□□□□ 0.71
SHKBP1-204ENST00000594862 THP07101 528 aa19.47■□□□□ 0.71
SHKBP1-204ENST00000594862 MCF2P10911 925 aa19.47■□□□□ 0.71
SHKBP1-204ENST00000594862 CREMQ03060 361 aa19.47■□□□□ 0.71
SHKBP1-204ENST00000594862 ZP2Q05996 745 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms