RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 CTAGE3PQ8IX95 158 aa13.08□□□□□ -0.31
LIG1-207ENST00000594759 C4orf33Q8N1A6 199 aa13.08□□□□□ -0.31
LIG1-207ENST00000594759 TRAIPQ9BWF2 469 aa13.08□□□□□ -0.31
LIG1-207ENST00000594759 ADAM33Q9BZ11 813 aa13.08□□□□□ -0.31
LIG1-207ENST00000594759 ALG13Q9NP73 1137 aaKnown RBP13.08□□□□□ -0.31
LIG1-207ENST00000594759 HEY2Q9UBP5 337 aa13.08□□□□□ -0.31
LIG1-207ENST00000594759 SMIM31A0A1B0GVY4 71 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 IQCA1LA6NCM1 817 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 P4HA2O15460 535 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 APBA3O96018 575 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 LYNP07948 512 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 VCAM1P19320 739 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 MKRN4PQ13434 485 aaPredicted RBP13.08□□□□□ -0.32
LIG1-207ENST00000594759 HIC1Q14526 733 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 RNF43Q68DV7 783 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 DDHD1Q8NEL9 900 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 PTPRN2Q92932 1015 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 FERMT1Q9BQL6 677 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 ISCA1Q9BUE6 129 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 QTRT2Q9H974 415 aaKnown RBP13.08□□□□□ -0.32
LIG1-207ENST00000594759 GGA1Q9UJY5 639 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 ZSCAN9O15535 394 aaPredicted RBP13.08□□□□□ -0.32
LIG1-207ENST00000594759 GMNNO75496 209 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 MT-ND3P03897 115 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 BCRP11274 1271 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 CACNB1Q02641 598 aaPredicted RBP13.08□□□□□ -0.32
LIG1-207ENST00000594759 MAPK7Q13164 816 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 STAT4Q14765 748 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 TNIP1Q15025 636 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 ANKRD20A4Q4UJ75 823 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 LCORLQ8N3X6 602 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 OGFOD1Q8N543 542 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 ZNF507Q8TCN5 953 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 JDP2Q8WYK2 163 aa13.08□□□□□ -0.32
LIG1-207ENST00000594759 LAD1O00515 517 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 GIPC1O14908 333 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 PGM3O95394 542 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 MYBPC3Q14896 1274 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 EAPPQ56P03 285 aaPredicted RBP13.07□□□□□ -0.32
LIG1-207ENST00000594759 MDH1BQ5I0G3 518 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 ERMNQ8TAM6 284 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 CKAP2Q8WWK9 683 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 SPATA16Q9BXB7 569 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 ZMYND8Q9ULU4 1186 aaPredicted RBP13.07□□□□□ -0.32
LIG1-207ENST00000594759 FRMD4BQ9Y2L6 1034 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.07□□□□□ -0.32
LIG1-207ENST00000594759 HLA-DOAP06340 250 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 ZBTB8BQ8NAP8 495 aaPredicted RBP13.07□□□□□ -0.32
LIG1-207ENST00000594759 SPATA20Q8TB22 786 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 C9orf72Q96LT7 481 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 INPP4AQ96PE3 977 aaPredicted RBP13.07□□□□□ -0.32
LIG1-207ENST00000594759 BTBD10Q9BSF8 475 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 TRIM9Q9C026 710 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 SAYSD1Q9NPB0 183 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 CIDEBQ9UHD4 219 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 ITSN1Q15811 1721 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 TRIM43BA6NCK2 446 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 ALOX15P16050 662 aaPredicted RBP13.07□□□□□ -0.32
LIG1-207ENST00000594759 EIF2B2P49770 351 aaKnown RBP13.07□□□□□ -0.32
LIG1-207ENST00000594759 GTF2IP78347 998 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 MTFR1Q15390 333 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 LGSNQ5TDP6 509 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 EMC10Q5UCC4 262 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 DNAAF5Q86Y56 855 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 LRRC43Q8N309 656 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 OLFML3Q9NRN5 406 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 PHF2O75151 1096 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 TFAP4Q01664 338 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 KCNH2Q12809 1159 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 OVGP1Q12889 678 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 TMEM110Q86TL2 294 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 FBXL16Q8N461 479 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 RBM17Q96I25 401 aaKnown RBP13.07□□□□□ -0.32
LIG1-207ENST00000594759 LRMDAQ9H2I8 198 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 DENND2DQ9H6A0 471 aaPredicted RBP13.07□□□□□ -0.32
LIG1-207ENST00000594759 ARHGEF38Q9NXL2 777 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 SMG5Q9UPR3 1016 aaKnown RBP13.07□□□□□ -0.32
LIG1-207ENST00000594759 TMA7Q9Y2S6 64 aaKnown RBP13.07□□□□□ -0.32
LIG1-207ENST00000594759 PXDNQ92626 1479 aa13.07□□□□□ -0.32
LIG1-207ENST00000594759 RSPH10B2B2RC85 870 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 ERVV-1B6SEH8 477 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 ZNF263O14978 683 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 ITGA2BP08514 1039 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 RSPH10BP0C881 870 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 HARSP12081 509 aaKnown RBP13.06□□□□□ -0.32
LIG1-207ENST00000594759 KCNJ1P48048 391 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 TCP10Q12799 353 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 TXNRD1Q16881 649 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 CLEC4GQ6UXB4 293 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 SH3RF1Q7Z6J0 888 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 SCUBE1Q8IWY4 988 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 GUF1Q8N442 669 aaKnown RBP13.06□□□□□ -0.32
LIG1-207ENST00000594759 STKLD1Q8NE28 680 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 TPCN2Q8NHX9 752 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 CYP4F11Q9HBI6 524 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 ETNK2Q9NVF9 386 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 PCDHA4Q9UN74 947 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 IGBP1P78318 339 aa13.06□□□□□ -0.32
LIG1-207ENST00000594759 RABL6Q3YEC7 729 aaPredicted RBP13.06□□□□□ -0.32
LIG1-207ENST00000594759 DNAL1Q4LDG9 190 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 923.8 ms