RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 LYPLA2O95372 231 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 SOD2P04179 222 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 HSP90AA1P07900 732 aaKnown RBP13.85□□□□□ -0.19
UPF1-203ENST00000594504 SPATA31D3P0C874 917 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 AXLP30530 894 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 RARRES1P49788 294 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 TFDP1Q14186 410 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 MXD4Q14582 209 aaPredicted RBP13.85□□□□□ -0.19
UPF1-203ENST00000594504 RILPL1Q5EBL4 403 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 NOTUMQ6P988 496 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 SPATA31D4Q6ZUB0 917 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 PPFIBP1Q86W92 1011 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 ZDHHC14Q8IZN3 488 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 B3GALT6Q96L58 329 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 MTMR9Q96QG7 549 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 POLR3FQ9H1D9 316 aaPredicted RBP13.85□□□□□ -0.19
UPF1-203ENST00000594504 NXF3Q9H4D5 531 aaKnown RBP13.85□□□□□ -0.19
UPF1-203ENST00000594504 SFXN1Q9H9B4 322 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 ANKEF1Q9NU02 776 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 FOXD4L1Q9NU39 408 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 KLK14Q9P0G3 267 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 CACNG4Q9UBN1 327 aa13.85□□□□□ -0.19
UPF1-203ENST00000594504 VPS37CA5D8V6 355 aaPredicted RBP13.84□□□□□ -0.19
UPF1-203ENST00000594504 CARNS1A5YM72 827 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 TEX28O15482 410 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 USO1O60763 962 aaKnown RBP13.84□□□□□ -0.19
UPF1-203ENST00000594504 DGAT1O75907 488 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 NPTXRO95502 500 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 SPATA31C1P0DKV0 1188 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 DSC1Q08554 894 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 ZNF174Q15697 407 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 KIAA0319Q5VV43 1072 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 BRAPQ7Z569 592 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 IFNLR1Q8IU57 520 aaPredicted RBP13.84□□□□□ -0.19
UPF1-203ENST00000594504 GLYCTKQ8IVS8 523 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 UBALD2Q8IYN6 164 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 RNF168Q8IYW5 571 aaPredicted RBP13.84□□□□□ -0.19
UPF1-203ENST00000594504 PLCD3Q8N3E9 789 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 TMEM105Q8N8V8 129 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 GSTCDQ8NEC7 633 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 RPS6KC1Q96S38 1066 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 PRRX2Q99811 253 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 HERC2P3Q9BVR0 1158 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 UBN1Q9NPG3 1134 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 MAN1C1Q9NR34 630 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 USP20Q9Y2K6 914 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 MUC6Q6W4X9 2439 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 DENND4AQ7Z401 1863 aa13.84□□□□□ -0.19
UPF1-203ENST00000594504 CCDC195A0A1B0GUA6 201 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 TTLL13PA6NNM8 815 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 MED24O75448 989 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 EFEMP2O95967 443 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 URODP06132 367 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 OR52Z1P0C646 297 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 SYT1P21579 422 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 TOB1P50616 345 aaPredicted RBP13.83□□□□□ -0.2
UPF1-203ENST00000594504 POU5F1BQ06416 359 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 NCBP1Q09161 790 aaKnown RBP13.83□□□□□ -0.2
UPF1-203ENST00000594504 NBR1Q14596 966 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 CATSPER3Q86XQ3 398 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 PALB2Q86YC2 1186 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 ATOH1Q92858 354 aaPredicted RBP13.83□□□□□ -0.2
UPF1-203ENST00000594504 GPR62Q9BZJ7 368 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 TRIM6Q9C030 488 aaPredicted RBP13.83□□□□□ -0.2
UPF1-203ENST00000594504 CXCL16Q9H2A7 254 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 POLD4Q9HCU8 107 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 PARP2Q9UGN5 583 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 USTQ9Y2C2 406 aa13.83□□□□□ -0.2
UPF1-203ENST00000594504 A0A1B0GUA9 196 aa13.82□□□□□ -0.2
UPF1-203ENST00000594504 LRRIQ4A6NIV6 560 aa13.82□□□□□ -0.2
UPF1-203ENST00000594504 INPPL1O15357 1258 aa13.82□□□□□ -0.2
UPF1-203ENST00000594504 N4BP1O75113 896 aaKnown RBP13.82□□□□□ -0.2
UPF1-203ENST00000594504 RFPL2O75678 378 aa13.82□□□□□ -0.2
UPF1-203ENST00000594504 GLUD2P49448 558 aa13.82□□□□□ -0.2
UPF1-203ENST00000594504 CCDC149Q6ZUS6 474 aa13.82□□□□□ -0.2
UPF1-203ENST00000594504 RSAD2Q8WXG1 361 aa13.82□□□□□ -0.2
UPF1-203ENST00000594504 ACSF2Q96CM8 615 aaPredicted RBP13.82□□□□□ -0.2
UPF1-203ENST00000594504 CCDC43Q96MW1 224 aaKnown RBP13.82□□□□□ -0.2
UPF1-203ENST00000594504 PAAF1Q9BRP4 392 aa13.82□□□□□ -0.2
UPF1-203ENST00000594504 COLEC11Q9BWP8 271 aa13.82□□□□□ -0.2
UPF1-203ENST00000594504 GIT1Q9Y2X7 761 aa13.82□□□□□ -0.2
UPF1-203ENST00000594504 PCDHB6Q9Y5E3 794 aa13.82□□□□□ -0.2
UPF1-203ENST00000594504 LAD1O00515 517 aa13.81□□□□□ -0.2
UPF1-203ENST00000594504 STX6O43752 255 aa13.81□□□□□ -0.2
UPF1-203ENST00000594504 NARSO43776 548 aaKnown RBP13.81□□□□□ -0.2
UPF1-203ENST00000594504 XRCC6P12956 609 aaKnown RBP eCLIP13.81□□□□□ -0.2
UPF1-203ENST00000594504 PDIA4P13667 645 aaKnown RBP13.81□□□□□ -0.2
UPF1-203ENST00000594504 RPL17P18621 184 aaKnown RBP13.81□□□□□ -0.2
UPF1-203ENST00000594504 DSG1Q02413 1049 aa13.81□□□□□ -0.2
UPF1-203ENST00000594504 PCBP1Q15365 356 aaKnown RBP eCLIP13.81□□□□□ -0.2
UPF1-203ENST00000594504 SLC27A1Q6PCB7 646 aa13.81□□□□□ -0.2
UPF1-203ENST00000594504 C4orf32Q8N8J7 132 aa13.81□□□□□ -0.2
UPF1-203ENST00000594504 ST13P5Q8NFI4 369 aaPredicted RBP13.81□□□□□ -0.2
UPF1-203ENST00000594504 BSNDQ8WZ55 320 aa13.81□□□□□ -0.2
UPF1-203ENST00000594504 CCDC51Q96ER9 411 aa13.81□□□□□ -0.2
UPF1-203ENST00000594504 NFKBIZQ9BYH8 718 aa13.81□□□□□ -0.2
UPF1-203ENST00000594504 KCNK12Q9HB15 430 aa13.81□□□□□ -0.2
UPF1-203ENST00000594504 RXFP1Q9HBX9 757 aa13.81□□□□□ -0.2
UPF1-203ENST00000594504 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.81□□□□□ -0.2
UPF1-203ENST00000594504 CHST7Q9NS84 486 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms