RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 TMEM206Q9H813 350 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 MINDY3Q9H8M7 445 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 IFT122Q9HBG6 1241 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 IMPACTQ9P2X3 320 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 GINS2Q9Y248 185 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 TRPV2Q9Y5S1 764 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 NR2E3Q9Y5X4 410 aa11.43□□□□□ -0.58
VPS4B-204ENST00000589604 A0A087WZ62 844 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 CAND2O75155 1236 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 GNA14O95837 355 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 CXCL10P02778 98 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 SRGAP2CP0DJJ0 459 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 MCCD1P59942 119 aaPredicted RBP11.42□□□□□ -0.58
VPS4B-204ENST00000589604 MYBPC2Q14324 1141 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 MAN2A1Q16706 1144 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 FILIP1LQ4L180 1135 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 FBXO47Q5MNV8 452 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 CDCA2Q69YH5 1023 aaPredicted RBP11.42□□□□□ -0.58
VPS4B-204ENST00000589604 ARMCX5Q6P1M9 558 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 FRMD5Q7Z6J6 570 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 CREBRFQ8IUR6 639 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 CCDC155Q8N6L0 562 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 ZSWIM2Q8NEG5 633 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 ANKRD20A12PQ8NF67 263 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 GOLGA5Q8TBA6 731 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 CACTINQ8WUQ7 758 aaKnown RBP11.42□□□□□ -0.58
VPS4B-204ENST00000589604 PSPC1Q8WXF1 523 aaKnown RBP11.42□□□□□ -0.58
VPS4B-204ENST00000589604 NLRP4Q96MN2 994 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 MAP7D2Q96T17 732 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 GDF15Q99988 308 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 FDXACB1Q9BRP7 624 aaPredicted RBP11.42□□□□□ -0.58
VPS4B-204ENST00000589604 CBWD1Q9BRT8 395 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 PRKAG2Q9UGJ0 569 aa11.42□□□□□ -0.58
VPS4B-204ENST00000589604 NOC2LQ9Y3T9 749 aaKnown RBP11.42□□□□□ -0.58
VPS4B-204ENST00000589604 ITIH6Q6UXX5 1313 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 SLC16A3O15427 465 aaKnown RBP11.41□□□□□ -0.58
VPS4B-204ENST00000589604 PTMAP06454 111 aaKnown RBP11.41□□□□□ -0.58
VPS4B-204ENST00000589604 RPL13P26373 211 aaKnown RBP11.41□□□□□ -0.58
VPS4B-204ENST00000589604 TMOD1P28289 359 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 CD52P31358 61 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 DNM2P50570 870 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 SNRPFP62306 86 aaKnown RBP11.41□□□□□ -0.58
VPS4B-204ENST00000589604 UBXN1Q04323 297 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 PPP2R5AQ15172 486 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 VWA3BQ502W6 1294 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 PRPF38BQ5VTL8 546 aaKnown RBP11.41□□□□□ -0.58
VPS4B-204ENST00000589604 SPECC1LQ69YQ0 1117 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 HS2ST1Q7LGA3 356 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 SYCP3Q8IZU3 236 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 TCP11Q8WWU5 503 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 JPH2Q9BR39 696 aaPredicted RBP11.41□□□□□ -0.58
VPS4B-204ENST00000589604 MKNK1Q9BUB5 465 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 CCDC113Q9H0I3 377 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 NDST4Q9H3R1 872 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 TMEM134Q9H6X4 195 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 CGNQ9P2M7 1197 aaKnown RBP11.41□□□□□ -0.58
VPS4B-204ENST00000589604 KCNG1Q9UIX4 513 aa11.41□□□□□ -0.58
VPS4B-204ENST00000589604 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS4B-204ENST00000589604 A0A1W2PQC6 194 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 LRRIQ4A6NIV6 560 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 TTLL13PA6NNM8 815 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 H0YCG3 227 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 RNF225M0QZC1 329 aaPredicted RBP11.4□□□□□ -0.58
VPS4B-204ENST00000589604 PIGRP01833 764 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 TPM3P06753 285 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 SCP2P22307 547 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 CRYBB1P53674 252 aaPredicted RBP11.4□□□□□ -0.58
VPS4B-204ENST00000589604 FPGSQ05932 587 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 MXD4Q14582 209 aaPredicted RBP11.4□□□□□ -0.58
VPS4B-204ENST00000589604 C9orf50Q5SZB4 431 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 RSPH3Q86UC2 560 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 FAM228AQ86W67 206 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 RNF149Q8NC42 400 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 NLRP7Q8WX94 980 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 ERGIC2Q96RQ1 377 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.4□□□□□ -0.589e-7■□□□□ 10.7
VPS4B-204ENST00000589604 HAPLN2Q9GZV7 340 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 PRO3102Q9H379 93 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 TMX1Q9H3N1 280 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 SIK3Q9Y2K2 1263 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 USP20Q9Y2K6 914 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 STYXL1Q9Y6J8 313 aa11.4□□□□□ -0.58
VPS4B-204ENST00000589604 CHD9Q3L8U1 2897 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 GOLGA6L6A8MZA4 724 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 DARSP14868 501 aaKnown RBP11.4□□□□□ -0.59
VPS4B-204ENST00000589604 KLK7P49862 253 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 CYP2J2P51589 502 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 GOLGA8FQ08AF8 430 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 GOLGA8DPQ0D2H9 430 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 LRMPQ12912 555 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 CCDC40Q4G0X9 1142 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 PLEKHG4Q58EX7 1191 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 TMEM240Q5SV17 173 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 DPY19L2P1Q6NXN4 242 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 LRRC8AQ8IWT6 810 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 TMEM199Q8N511 208 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 TC2NQ8N9U0 490 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 DBF4BQ8NFT6 615 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 DEPTORQ8TB45 409 aa11.4□□□□□ -0.59
VPS4B-204ENST00000589604 LINC01599Q8WXQ3 324 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms