RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 POU3F2P20265 443 aaPredicted RBP4.72□□□□□ -1.65
VPS4B-203ENST00000588323 DDX6P26196 483 aaKnown RBP eCLIP4.72□□□□□ -1.65
VPS4B-203ENST00000588323 CLK3P49761 638 aaKnown RBP4.72□□□□□ -1.65
VPS4B-203ENST00000588323 PHC1P78364 1004 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 MEF2AQ02078 507 aaPredicted RBP4.72□□□□□ -1.65
VPS4B-203ENST00000588323 DDB1Q16531 1140 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 C21orf62-AS1Q17RA5 79 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 EFCAB12Q6NXP0 572 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 RD3Q7Z3Z2 195 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 SYT12Q8IV01 421 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 CPEB3Q8NE35 698 aaKnown RBP4.72□□□□□ -1.65
VPS4B-203ENST00000588323 RSAD2Q8WXG1 361 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 MTFR1LQ9H019 292 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 WNT8AQ9H1J5 351 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.72□□□□□ -1.65
VPS4B-203ENST00000588323 SYBUQ9NX95 663 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 PRSS50Q9UI38 385 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 KCNG1Q9UIX4 513 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 CD2APQ9Y5K6 639 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 KAT6AQ92794 2004 aa4.72□□□□□ -1.65
VPS4B-203ENST00000588323 ZMYM3Q14202 1370 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 LCHNA4D1U4 455 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 UNC119BA6NIH7 251 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 RAB11FIP3O75154 756 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 RBP3P10745 1247 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 SCNN1BP51168 640 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 MXRA7P84157 204 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 CSRP2Q16527 193 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 PDCD4Q53EL6 469 aaKnown RBP4.71□□□□□ -1.66
VPS4B-203ENST00000588323 ZKSCAN2Q63HK3 967 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 ANKS6Q68DC2 871 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 BTNL9Q6UXG8 535 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 FRMD7Q6ZUT3 714 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 SMC1BQ8NDV3 1235 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 LINC00476Q8WZB0 136 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 TFAP2CQ92754 450 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 TEX101Q9BY14 249 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 ANO3Q9BYT9 981 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 MS4A5Q9H3V2 200 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 DKK2Q9UBU2 259 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 EVLQ9UI08 416 aaPredicted RBP4.71□□□□□ -1.66
VPS4B-203ENST00000588323 INSL6Q9Y581 213 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 PPP2R3BQ9Y5P8 575 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 EPN1Q9Y6I3 576 aaPredicted RBP4.71□□□□□ -1.66
VPS4B-203ENST00000588323 SPATA31A6Q5VVP1 1343 aa4.71□□□□□ -1.66
VPS4B-203ENST00000588323 PIPSLA2A3N6 862 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 TBKBP1A7MCY6 615 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 ZNF185O15231 689 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 ITGA10O75578 1167 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 ZNF37AP17032 561 aaPredicted RBP4.7□□□□□ -1.66
VPS4B-203ENST00000588323 LSSP48449 732 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 SEC24CP53992 1094 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 MANFP55145 182 aaKnown RBP4.7□□□□□ -1.66
VPS4B-203ENST00000588323 IL2P60568 153 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 BLOC1S1P78537 153 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 TERF2Q15554 542 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 C19orf54Q5BKX5 351 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 ABHD17BQ5VST6 288 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 PDZD4Q76G19 769 aaPredicted RBP4.7□□□□□ -1.66
VPS4B-203ENST00000588323 C11orf74Q86VG3 221 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 RNF169Q8NCN4 708 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 OR14C36Q8NHC7 312 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 MDM1Q8TC05 714 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 SREK1Q8WXA9 508 aaKnown RBP4.7□□□□□ -1.66
VPS4B-203ENST00000588323 R3HDMLQ9H3Y0 253 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 SPTLC3Q9NUV7 552 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 COX11Q9Y6N1 276 aa4.7□□□□□ -1.66
VPS4B-203ENST00000588323 SHROOM4Q9ULL8 1493 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 FAM83GA6ND36 823 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 KDM1AO60341 852 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 GASTP01350 101 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 TYRP1P17643 537 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 CXCR5P32302 372 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 TP53BP2Q13625 1128 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 PCBP1Q15365 356 aaKnown RBP eCLIP4.69□□□□□ -1.66
VPS4B-203ENST00000588323 BMT2Q1RMZ1 405 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 PRR16Q569H4 304 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 ABHD15Q6UXT9 468 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 HOMER1Q86YM7 354 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 AHI1Q8N157 1196 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 PPM1KQ8N3J5 372 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 OR2W6PQ8NHA6 318 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 ZFP28Q8NHY6 868 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 SNX33Q8WV41 574 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 NINJ1Q92982 152 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 RSAD1Q9HA92 442 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 GPRC5DQ9NZD1 345 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 RNF181Q9P0P0 153 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 TMPRSS11EQ9UL52 423 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 USP15Q9Y4E8 981 aaPredicted RBP4.69□□□□□ -1.66
VPS4B-203ENST00000588323 FPGT-TNNI3KV9GXZ4 949 aa4.69□□□□□ -1.66
VPS4B-203ENST00000588323 SETD1BQ9UPS6 1966 aaKnown RBP4.68□□□□□ -1.66
VPS4B-203ENST00000588323 TMEM127O75204 238 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 SPDEFO95238 335 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 FOXI1Q12951 378 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 RESTQ13127 1097 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 TRIM25Q14258 630 aaKnown RBP4.68□□□□□ -1.66
VPS4B-203ENST00000588323 COLEC12Q5KU26 742 aa4.68□□□□□ -1.66
VPS4B-203ENST00000588323 FAM102AQ5T9C2 384 aaPredicted RBP4.68□□□□□ -1.66
VPS4B-203ENST00000588323 LRCH2Q5VUJ6 765 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms