RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 BMP2KLQ5H9B9 411 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 FUT10Q6P4F1 479 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 GPR65Q8IYL9 337 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 SLC7A3Q8WY07 619 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 TMEM143Q96AN5 459 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 BORCS6Q96GS4 357 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 MBOAT7Q96N66 472 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 DHX33Q9H6R0 707 aaKnown RBP12.34□□□□□ -0.43
VPS4B-202ENST00000588059 CDH7Q9ULB5 785 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 SMG5Q9UPR3 1016 aaKnown RBP12.34□□□□□ -0.43
VPS4B-202ENST00000588059 MTF2Q9Y483 593 aaPredicted RBP12.34□□□□□ -0.43
VPS4B-202ENST00000588059 HES2Q9Y543 173 aa12.34□□□□□ -0.43
VPS4B-202ENST00000588059 EML1O00423 815 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 TSPAN1O60635 241 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 LILRB5O75023 590 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 CENPBP07199 599 aaPredicted RBP12.33□□□□□ -0.44
VPS4B-202ENST00000588059 CPA1P15085 419 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 SDHBP21912 280 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 NTHL1P78549 312 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 AKAP17AQ02040 695 aaKnown RBP12.33□□□□□ -0.44
VPS4B-202ENST00000588059 PRKCQQ04759 706 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 UBXN2BQ14CS0 331 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 USP41Q3LFD5 358 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 GRASPQ7Z6J2 395 aaPredicted RBP12.33□□□□□ -0.44
VPS4B-202ENST00000588059 GPR161Q8N6U8 529 aaKnown RBP12.33□□□□□ -0.44
VPS4B-202ENST00000588059 RNF149Q8NC42 400 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 ZBTB44Q8NCP5 570 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 NELL1Q92832 810 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 COLEC11Q9BWP8 271 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 RNF26Q9BY78 433 aaPredicted RBP12.33□□□□□ -0.44
VPS4B-202ENST00000588059 OSBPL6Q9BZF3 934 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 EPC1Q9H2F5 836 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 LTB4R2Q9NPC1 389 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 BMP2KQ9NSY1 1161 aaPredicted RBP12.33□□□□□ -0.44
VPS4B-202ENST00000588059 WRAP73Q9P2S5 460 aaPredicted RBP12.33□□□□□ -0.44
VPS4B-202ENST00000588059 FBXW11Q9UKB1 542 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 VWA8A3KMH1 1905 aa12.33□□□□□ -0.44
VPS4B-202ENST00000588059 FAM170BA6NMN3 283 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 NR1I2O75469 434 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 ERLIN2O94905 339 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 HMGB1P09429 215 aaKnown RBP12.32□□□□□ -0.44
VPS4B-202ENST00000588059 RFC5P40937 340 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 MAGEA9P43362 315 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 QARSP47897 775 aaKnown RBP12.32□□□□□ -0.44
VPS4B-202ENST00000588059 FGD1P98174 961 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 CREMQ03060 361 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 LMNB2Q03252 620 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 CSTF1Q05048 431 aaKnown RBP12.32□□□□□ -0.44
VPS4B-202ENST00000588059 KRT32Q14532 448 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 SLC44A4Q53GD3 710 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 RTP2Q5QGT7 225 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 PRSS55Q6UWB4 352 aaPredicted RBP12.32□□□□□ -0.44
VPS4B-202ENST00000588059 Q6ZUG5 572 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 MTSS1LQ765P7 747 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 FERMT3Q86UX7 667 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 GSTCDQ8NEC7 633 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 ATRIPQ8WXE1 791 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 FGF13Q92913 245 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 BRF1Q92994 677 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 CCDC51Q96ER9 411 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 CEP170P1Q96L14 293 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 APOL6Q9BWW8 343 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 SLC26A6Q9BXS9 759 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 NXF3Q9H4D5 531 aaKnown RBP12.32□□□□□ -0.44
VPS4B-202ENST00000588059 ZSCAN32Q9NX65 697 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 ADAM28Q9UKQ2 775 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 VAV3Q9UKW4 847 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 CDV3Q9UKY7 258 aaKnown RBP12.32□□□□□ -0.44
VPS4B-202ENST00000588059 PPME1Q9Y570 386 aa12.32□□□□□ -0.44
VPS4B-202ENST00000588059 PRR5-ARHGAP8B1AHC4 643 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 SLC37A4O43826 429 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 HNRNPA1P09651 372 aaKnown RBP eCLIP12.31□□□□□ -0.44
VPS4B-202ENST00000588059 IFNAR1P17181 557 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 CD72P21854 359 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 TGM1P22735 817 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 AXLP30530 894 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 NLRP5P59047 1200 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 ARHGAP8P85298 464 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 PPP2R5CQ13362 524 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 EMC2Q15006 297 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 NOTUMQ6P988 496 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 MOXD1Q6UVY6 613 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 RSPO2Q6UXX9 243 aaPredicted RBP12.31□□□□□ -0.44
VPS4B-202ENST00000588059 RABGGTAQ92696 567 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 SECISBP2LQ93073 1101 aaKnown RBP12.31□□□□□ -0.44
VPS4B-202ENST00000588059 CLDN23Q96B33 292 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 CPB2Q96IY4 423 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 KXD1Q9BQD3 176 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 C22orf23Q9BZE7 217 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 CSRNP2Q9H175 543 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 SH3GLB2Q9NR46 395 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 CACNG4Q9UBN1 327 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 PCDHA4Q9UN74 947 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 GIT1Q9Y2X7 761 aa12.31□□□□□ -0.44
VPS4B-202ENST00000588059 ZFHX4Q86UP3 3567 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 DCDC2BA2VCK2 349 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 M0R2N6 131 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 CCL16O15467 120 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 ASAP2O43150 1006 aa12.3□□□□□ -0.44
VPS4B-202ENST00000588059 CDC45O75419 566 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms