RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 SCNN1GP51170 649 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 CALCRLQ16602 461 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 GSTCDQ8NEC7 633 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 ASAP3Q8TDY4 903 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 STAMQ92783 540 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 CPB2Q96IY4 423 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 ZFP42Q96MM3 310 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 COLEC11Q9BWP8 271 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 TRIM6Q9C030 488 aaPredicted RBP13.19□□□□□ -0.3
LIG3-209ENST00000586435 TTC12Q9H892 705 aaPredicted RBP13.19□□□□□ -0.3
LIG3-209ENST00000586435 KCNK12Q9HB15 430 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.19□□□□□ -0.3
LIG3-209ENST00000586435 MIOSQ9NXC5 875 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 HES2Q9Y543 173 aa13.19□□□□□ -0.3
LIG3-209ENST00000586435 MYO15AQ9UKN7 3530 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 CLUHO75153 1309 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 A0A1B0GUA9 196 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 NEMFO60524 1076 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 XRCC6P12956 609 aaKnown RBP eCLIP13.18□□□□□ -0.3
LIG3-209ENST00000586435 GLRA2P23416 452 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 CREMQ03060 361 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 GRIK3Q13003 919 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 FUT10Q6P4F1 479 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 SLC27A1Q6PCB7 646 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 PPP4R3CPQ6ZMV5 832 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 TAS1R1Q7RTX1 841 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 GTF3C6Q969F1 213 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 PRIMPOLQ96LW4 560 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 CCDC43Q96MW1 224 aaKnown RBP13.18□□□□□ -0.3
LIG3-209ENST00000586435 NXF3Q9H4D5 531 aaKnown RBP13.18□□□□□ -0.3
LIG3-209ENST00000586435 PLEKHA4Q9H4M7 779 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 FNIP2Q9P278 1114 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 EPS15L1Q9UBC2 864 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 DOCK6Q96HP0 2047 aa13.18□□□□□ -0.3
LIG3-209ENST00000586435 VWA8A3KMH1 1905 aa13.17□□□□□ -0.3
LIG3-209ENST00000586435 CCDC195A0A1B0GUA6 201 aa13.17□□□□□ -0.3
LIG3-209ENST00000586435 N4BP1O75113 896 aaKnown RBP13.17□□□□□ -0.3
LIG3-209ENST00000586435 NPR3P17342 541 aa13.17□□□□□ -0.3
LIG3-209ENST00000586435 USP41Q3LFD5 358 aa13.17□□□□□ -0.3
LIG3-209ENST00000586435 NXPE3Q969Y0 559 aa13.17□□□□□ -0.3
LIG3-209ENST00000586435 ZNF707Q96C28 371 aaPredicted RBP13.17□□□□□ -0.3
LIG3-209ENST00000586435 MTMR9Q96QG7 549 aa13.17□□□□□ -0.3
LIG3-209ENST00000586435 RTP3Q9BQQ7 232 aa13.17□□□□□ -0.3
LIG3-209ENST00000586435 APOL6Q9BWW8 343 aa13.17□□□□□ -0.3
LIG3-209ENST00000586435 POLR3FQ9H1D9 316 aaPredicted RBP13.17□□□□□ -0.3
LIG3-209ENST00000586435 ZDHHC7Q9NXF8 308 aa13.17□□□□□ -0.3
LIG3-209ENST00000586435 ADAM28Q9UKQ2 775 aa13.17□□□□□ -0.3
LIG3-209ENST00000586435 TRIP11Q15643 1979 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 CFAP54Q96N23 3096 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 PRR23AA6NEV1 266 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 F8W810 466 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 B4GALT5O43286 388 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 DTNBO60941 627 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 RFPL2O75678 378 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 NPTXRO95502 500 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 ME3Q16798 604 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 FAM187BQ17R55 369 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 CDCA2Q69YH5 1023 aaPredicted RBP13.16□□□□□ -0.3
LIG3-209ENST00000586435 DIS3L2Q8IYB7 885 aaKnown RBP13.16□□□□□ -0.3
LIG3-209ENST00000586435 CCDC105Q8IYK2 499 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 NSUN7Q8NE18 718 aaKnown RBP13.16□□□□□ -0.3
LIG3-209ENST00000586435 MCPH1Q8NEM0 835 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 FLCNQ8NFG4 579 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 SMG7Q92540 1137 aaKnown RBP13.16□□□□□ -0.3
LIG3-209ENST00000586435 GPR62Q9BZJ7 368 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 PRMT7Q9NVM4 692 aaPredicted RBP13.16□□□□□ -0.3
LIG3-209ENST00000586435 WNT16Q9UBV4 365 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 DAXXQ9UER7 740 aaPredicted RBP13.16□□□□□ -0.3
LIG3-209ENST00000586435 FBXL21Q9UKT6 434 aa13.16□□□□□ -0.3
LIG3-209ENST00000586435 MYH15Q9Y2K3 1946 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 FANCMQ8IYD8 2048 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 SPTBN4Q9H254 2564 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 POTEMA6NI47 508 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 BTBD18B2RXH4 712 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 WNT7AO00755 349 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 TGM5O43548 720 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 USO1O60763 962 aaKnown RBP13.15□□□□□ -0.3
LIG3-209ENST00000586435 LARGE1O95461 756 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 SPATA31C1P0DKV0 1188 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 AKAP5P24588 427 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 GBP2P32456 591 aaPredicted RBP13.15□□□□□ -0.3
LIG3-209ENST00000586435 TXKP42681 527 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 LILRA6Q6PI73 481 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 ASCL5Q7RTU5 278 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 SIX5Q8N196 739 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 PIGOQ8TEQ8 1089 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 NT5C3AQ9H0P0 336 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 FZD8Q9H461 694 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 TUFT1Q9NNX1 390 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.15□□□□□ -0.3
LIG3-209ENST00000586435 GVINP1Q7Z2Y8 2422 aa13.15□□□□□ -0.3
LIG3-209ENST00000586435 SF3B1O75533 1304 aaKnown RBP eCLIP13.14□□□□□ -0.316e-6■■■■■ 103.4
LIG3-209ENST00000586435 LRRIQ4A6NIV6 560 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 NARSO43776 548 aaKnown RBP13.14□□□□□ -0.31
LIG3-209ENST00000586435 SRFP11831 508 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 ORC2Q13416 577 aaPredicted RBP13.14□□□□□ -0.31
LIG3-209ENST00000586435 TUSC3Q13454 348 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 TRIM29Q14134 588 aa13.14□□□□□ -0.31
LIG3-209ENST00000586435 HSP90AA2PQ14568 343 aaPredicted RBP13.14□□□□□ -0.31
LIG3-209ENST00000586435 CDR2LQ86X02 465 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms