RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	GBP3	Q9H0R5	595 aa		13.87	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	RNF39	Q9H2S5	420 aa		13.87	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	NXF3	Q9H4D5	531 aa	Known RBP	13.87	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	ARHGAP28	Q9P2N2	729 aa		13.87	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	TNFSF13B	Q9Y275	285 aa		13.87	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	VPS37C	A5D8V6	355 aa	Predicted RBP	13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	PI4K2B	G5E9Z4	385 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	HIP1R	O75146	1068 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	EFEMP2	O95967	443 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	SYT1	P21579	422 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	SSTR3	P32745	418 aa	Predicted RBP	13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	ABCD1	P33897	745 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	NPTX2	P47972	431 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	AFF1	P51825	1210 aa	Known RBP	13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	SMTN	P53814	917 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	ITIH3	Q06033	890 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	TMEM132A	Q24JP5	1023 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	ATF7IP2	Q5U623	682 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	ANKRD54	Q6NXT1	300 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	CABP7	Q86V35	215 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	TMEM173	Q86WV6	379 aa	Predicted RBP	13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	DAW1	Q8N136	415 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	GSTCD	Q8NEC7	633 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	SUSD6	Q92537	303 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	ZFP42	Q96MM3	310 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	PNMA5	Q96PV4	448 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	RPS6KC1	Q96S38	1066 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	EMILIN2	Q9BXX0	1053 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	MRPL4	Q9BYD3	311 aa	Known RBP	13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	DZANK1	Q9NVP4	752 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	ODF2L	Q9ULJ1	636 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	BARX2	Q9UMQ3	279 aa	Predicted RBP	13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	HES2	Q9Y543	173 aa		13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	TDRD15	B5MCY1	1934 aa	Known RBP	13.86	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	CCDC169	A6NNP5	214 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	B4GALT3	O60512	393 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	CLASP2	O75122	1294 aa	Known RBP	13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	SOD2	P04179	222 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	PLA2G4B	P0C869	781 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	PLS3	P13797	630 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	AKAP5	P24588	427 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	OR1G1	P47890	313 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	SCNN1G	P51170	649 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	SLC12A3	P55017	1021 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	PEX3	P56589	373 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	MAPK7	Q13164	816 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	TUSC3	Q13454	348 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	SF3A1	Q15459	793 aa	Known RBP	13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	PTPN14	Q15678	1187 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	KCNK18	Q7Z418	384 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	RNF168	Q8IYW5	571 aa	Predicted RBP	13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	VN1R2	Q8NFZ6	395 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	BCL7C	Q8WUZ0	217 aa	Predicted RBP	13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	NECTIN4	Q96NY8	510 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	RUSC1	Q9BVN2	902 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	CCSER1	Q9C0I3	900 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	KMT5A	Q9NQR1	393 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	MRPL17	Q9NRX2	175 aa	Known RBP	13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	LARS	Q9P2J5	1176 aa	Known RBP	13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	PARP2	Q9UGN5	583 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	DPP7	Q9UHL4	492 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	USP15	Q9Y4E8	981 aa	Predicted RBP	13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	HCFC2	Q9Y5Z7	792 aa		13.85	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	LILRB3	O75022	631 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	BRD1	O95696	1058 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	TH	P07101	528 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	CREM	Q03060	361 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	ZRSR1	Q15695	479 aa	Known RBP	13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	CLUL1	Q15846	466 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	NT5DC1	Q5TFE4	455 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	CES5A	Q6NT32	575 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	ELMSAN1	Q6PJG2	1045 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	ACO2	Q99798	780 aa	Known RBP	13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	HERC2P3	Q9BVR0	1158 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	APOL6	Q9BWW8	343 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	PHF7	Q9BWX1	381 aa	Predicted RBP	13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	VN1R3	Q9BXE9	311 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	S1PR5	Q9H228	398 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	CD320	Q9NPF0	282 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	TOPORS	Q9NS56	1045 aa	Predicted RBP	13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	MARCH5	Q9NX47	278 aa		13.84	□□□□□ -0.19
CDK5RAP3-222	ENST00000581708	TTLL13P	A6NNM8	815 aa		13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	RECQL4	O94761	1208 aa		13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	SSB	P05455	408 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	UROD	P06132	367 aa		13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	MCF2	P10911	925 aa		13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	GLUD2	P49448	558 aa		13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	STRN3	Q13033	797 aa		13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	REST	Q13127	1097 aa		13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	CBX2	Q14781	532 aa	Predicted RBP	13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	SYCE2	Q6PIF2	218 aa		13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	ZPBP2	Q6X784	338 aa		13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	CDR2L	Q86X02	465 aa	Predicted RBP	13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	SLC22A17	Q8WUG5	538 aa		13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	KIFC3	Q9BVG8	833 aa		13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	ADAM7	Q9H2U9	754 aa		13.83	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	RXFP1	Q9HBX9	757 aa		13.83	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms