RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 NT5DC1Q5TFE4 455 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 RBM23Q86U06 439 aaKnown RBP16.34■□□□□ 0.21
SS18-212ENST00000579061 TMEM173Q86WV6 379 aaPredicted RBP16.34■□□□□ 0.21
SS18-212ENST00000579061 VPS52Q8N1B4 723 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 MRPL43Q8N983 215 aaKnown RBP16.34■□□□□ 0.21
SS18-212ENST00000579061 MSLNLQ96KJ4 702 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 APOL6Q9BWW8 343 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 MIOSQ9NXC5 875 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 PARP2Q9UGN5 583 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 ODF2LQ9ULJ1 636 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 TNFSF13BQ9Y275 285 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 BDP1A6H8Y1 2624 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 TRIP11Q15643 1979 aa16.34■□□□□ 0.21
SS18-212ENST00000579061 C2orf71A6NGG8 1288 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 NRP1O14786 923 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 SRGAP2BP0DMP2 458 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 CTSAP10619 480 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 PLS3P13797 630 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 LIG1P18858 919 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 AKAP5P24588 427 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 SMTNP53814 917 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 GRIK3Q13003 919 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 COASYQ13057 564 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 SMAD4Q13485 552 aaKnown RBP16.33■□□□□ 0.2
SS18-212ENST00000579061 KCNC3Q14003 757 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 ATF7IP2Q5U623 682 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 EEF1DP3Q658K8 133 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 FAM173BQ6P4H8 233 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 TMEM184AQ6ZMB5 413 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 GSTCDQ8NEC7 633 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 KCNN1Q92952 543 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 ZFP42Q96MM3 310 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 RPS6KC1Q96S38 1066 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 BLOC1S4Q9NUP1 217 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 CLEC1BQ9P126 229 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 LARSQ9P2J5 1176 aaKnown RBP16.33■□□□□ 0.2
SS18-212ENST00000579061 CD207Q9UJ71 328 aa16.33■□□□□ 0.2
SS18-212ENST00000579061 FBXO2Q9UK22 296 aaPredicted RBP16.33■□□□□ 0.2
SS18-212ENST00000579061 SFI1A8K8P3 1242 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 HIDE1A8MVS5 230 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 H0YCG3 227 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 PER2O15055 1255 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 MBTPS2O43462 519 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 NR1I2O75469 434 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 CXCL14O95715 111 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 GLP2RO95838 553 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 HSP90AA1P07900 732 aaKnown RBP16.32■□□□□ 0.2
SS18-212ENST00000579061 IL9P15248 144 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 PLCG1P19174 1290 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 SCP2P22307 547 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 MARCKSP29966 332 aaPredicted RBP16.32■□□□□ 0.2
SS18-212ENST00000579061 MUC3AQ02505 3323 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 SLC39A14Q15043 492 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 KARSQ15046 597 aaKnown RBP16.32■□□□□ 0.2
SS18-212ENST00000579061 ARSHQ5FYA8 562 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 TAS1R3Q7RTX0 852 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 FAM178BQ8IXR5 827 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 RASSF8Q8NHQ8 419 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 BCL7CQ8WUZ0 217 aaPredicted RBP16.32■□□□□ 0.2
SS18-212ENST00000579061 RAD54LQ92698 747 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 NECAB3Q96P71 396 aaPredicted RBP16.32■□□□□ 0.2
SS18-212ENST00000579061 USP28Q96RU2 1077 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 ACO2Q99798 780 aaKnown RBP16.32■□□□□ 0.2
SS18-212ENST00000579061 MRPL4Q9BYD3 311 aaKnown RBP16.32■□□□□ 0.2
SS18-212ENST00000579061 SNTG2Q9NY99 539 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 PRKAG3Q9UGI9 489 aa16.32■□□□□ 0.2
SS18-212ENST00000579061 CITO14578 2027 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 SLC16A4O15374 487 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 RECQL4O94761 1208 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 DDIT3P35638 169 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 NASPP49321 788 aaPredicted RBP16.31■□□□□ 0.2
SS18-212ENST00000579061 RAD51AP2Q09MP3 1159 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 SMAD2Q15796 467 aaKnown RBP16.31■□□□□ 0.2
SS18-212ENST00000579061 GPBP1Q86WP2 473 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 SMRP1Q8NCR6 262 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 TMEM161BQ8NDZ6 487 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 LRRC15Q8TF66 581 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 LARP4BQ92615 738 aaKnown RBP16.31■□□□□ 0.2
SS18-212ENST00000579061 COLEC11Q9BWP8 271 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 PTPRHQ9HD43 1115 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 MARCH5Q9NX47 278 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 STK17AQ9UEE5 414 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 CCDC39Q9UFE4 941 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 USP20Q9Y2K6 914 aa16.31■□□□□ 0.2
SS18-212ENST00000579061 EFEMP2O95967 443 aa16.3■□□□□ 0.2
SS18-212ENST00000579061 SOD2P04179 222 aa16.3■□□□□ 0.2
SS18-212ENST00000579061 TXLNAP40222 546 aa16.3■□□□□ 0.2
SS18-212ENST00000579061 OR1G1P47890 313 aa16.3■□□□□ 0.2
SS18-212ENST00000579061 ZNF131P52739 623 aa16.3■□□□□ 0.2
SS18-212ENST00000579061 CEBPZQ03701 1054 aaKnown RBP16.3■□□□□ 0.2
SS18-212ENST00000579061 STRN3Q13033 797 aa16.3■□□□□ 0.2
SS18-212ENST00000579061 MCM6Q14566 821 aa16.3■□□□□ 0.2
SS18-212ENST00000579061 RNF168Q8IYW5 571 aaPredicted RBP16.3■□□□□ 0.2
SS18-212ENST00000579061 KRI1Q8N9T8 703 aaKnown RBP16.3■□□□□ 0.2
SS18-212ENST00000579061 VN1R2Q8NFZ6 395 aa16.3■□□□□ 0.2
SS18-212ENST00000579061 EPSTI1Q96J88 318 aa16.3■□□□□ 0.2
SS18-212ENST00000579061 ZNF396Q96N95 335 aaPredicted RBP16.3■□□□□ 0.2
SS18-212ENST00000579061 VN1R3Q9BXE9 311 aa16.3■□□□□ 0.2
SS18-212ENST00000579061 KLK14Q9P0G3 267 aa16.3■□□□□ 0.2
SS18-212ENST00000579061 BARX2Q9UMQ3 279 aaPredicted RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms