RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 SEPT8Q92599 483 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 KCNF1Q9H3M0 494 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 HAUS4Q9H6D7 363 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 USP20Q9Y2K6 914 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 COL2A1P02458 1487 aaPredicted RBP10.87□□□□□ -0.67
SMG6-213ENST00000573166 TRAPPC3O43617 180 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 CEP104O60308 925 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 DUSP11O75319 330 aaKnown RBP10.87□□□□□ -0.67
SMG6-213ENST00000573166 IL18RAPO95256 599 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 KCNA2P16389 499 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 SLC12A3P55017 1021 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 CYP27A1Q02318 531 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 UGCGQ16739 394 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 OR6B2Q6IFH4 312 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 MPZL3Q6UWV2 235 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 LENG1Q96BZ8 264 aaPredicted RBP10.87□□□□□ -0.67
SMG6-213ENST00000573166 GPR20Q99678 358 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 SRRDQ9UH36 339 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 AMFRQ9UKV5 643 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 POLIQ9UNA4 740 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 PPP2R2CQ9Y2T4 447 aa10.87□□□□□ -0.67
SMG6-213ENST00000573166 TADA2AO75478 443 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 SPATA31C1P0DKV0 1188 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 SMIM10L2AP0DMW4 78 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 SMIM10L2BP0DMW5 78 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 CD44P16070 742 aaKnown RBP10.86□□□□□ -0.67
SMG6-213ENST00000573166 DCAF4L1Q3SXM0 396 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 C1orf186Q6ZWK4 172 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 SRGAP1Q7Z6B7 1085 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 SIX6OS1Q8N1H7 587 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 SPTLC3Q9NUV7 552 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 VAV3Q9UKW4 847 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 PCDHB7Q9Y5E2 793 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 ATP8B3O60423 1300 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 LY75O60449 1722 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 KIAA0100Q14667 2235 aaKnown RBP10.86□□□□□ -0.67
SMG6-213ENST00000573166 IGLV3-22A0A075B6J6 115 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 LRRC53A6NM62 1247 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 SEPT4O43236 478 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 MFAP3LO75121 409 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 ANXA13P27216 316 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 E2F4Q16254 413 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 ALKBH5Q6P6C2 394 aaKnown RBP10.86□□□□□ -0.67
SMG6-213ENST00000573166 ABHD15Q6UXT9 468 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 PHLDB2Q86SQ0 1253 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 C4orf32Q8N8J7 132 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 ZNF784Q8NCA9 323 aaPredicted RBP10.86□□□□□ -0.67
SMG6-213ENST00000573166 SLC38A7Q9NVC3 462 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 HDAC6Q9UBN7 1215 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 LIMA1Q9UHB6 759 aaKnown RBP10.86□□□□□ -0.67
SMG6-213ENST00000573166 PRG3Q9Y2Y8 225 aaPredicted RBP10.86□□□□□ -0.67
SMG6-213ENST00000573166 TTC26A0AVF1 554 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 NEFHP12036 1026 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 SKIP12755 728 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 OR1G1P47890 313 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 PRMT2P55345 433 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 MESDQ14696 234 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 HADHQ16836 314 aaKnown RBP10.86□□□□□ -0.67
SMG6-213ENST00000573166 MAP9Q49MG5 647 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 SPIRE2Q8WWL2 714 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 CCDC114Q96M63 670 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 MMTAG2Q9BU76 263 aaKnown RBP10.86□□□□□ -0.67
SMG6-213ENST00000573166 ZCCHC17Q9NP64 241 aaKnown RBP10.86□□□□□ -0.67
SMG6-213ENST00000573166 COL5A3P25940 1745 aaPredicted RBP10.86□□□□□ -0.67
SMG6-213ENST00000573166 WNK3Q9BYP7 1800 aa10.86□□□□□ -0.67
SMG6-213ENST00000573166 ADAMTS3O15072 1205 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 CD4P01730 458 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 INHAP05111 366 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 MCM3P25205 808 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 CASP4P49662 377 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 LEKR1Q6ZMV7 388 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 ANO5Q75V66 913 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 SND1Q7KZF4 910 aaKnown RBP eCLIP10.85□□□□□ -0.67
SMG6-213ENST00000573166 NAP1L3Q99457 506 aaPredicted RBP10.85□□□□□ -0.67
SMG6-213ENST00000573166 RNPEPQ9H4A4 650 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 NHEJ1Q9H9Q4 299 aaPredicted RBP10.85□□□□□ -0.67
SMG6-213ENST00000573166 RAB20Q9NX57 234 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 MORF4L1Q9UBU8 362 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 SYNGAP1Q96PV0 1343 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 STAG3L1P0CL83 205 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 GARTP22102 1010 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 ICAM3P32942 547 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 NBPF20Q3BBV1 942 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 DNAJC24Q6P3W2 148 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 PASD1Q8IV76 773 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 CEP112Q8N8E3 955 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 TMEM35BQ8NCS4 154 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 TRIM58Q8NG06 486 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 SH3TC2Q8TF17 1288 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 TRIM11Q96F44 468 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 RASAL2Q9UJF2 1139 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 SOWAHDA6NJG2 315 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 HLA-DRAP01903 254 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 CPB1P15086 417 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 SMPD1P17405 629 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 KIF11P52732 1056 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 ELF2Q15723 593 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 SGSM1Q2NKQ1 1148 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 CENPPQ6IPU0 288 aa10.85□□□□□ -0.67
SMG6-213ENST00000573166 ERICH1Q86X53 443 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms