RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 EPSTI1Q96J88 318 aa22.17■■□□□ 1.14
NUP88-204ENST00000572290 NTPCRQ9BSD7 190 aaKnown RBP22.17■■□□□ 1.14
NUP88-204ENST00000572290 BLOC1S4Q9NUP1 217 aa22.17■■□□□ 1.14
NUP88-204ENST00000572290 MORC2Q9Y6X9 1032 aaPredicted RBP22.17■■□□□ 1.14
NUP88-204ENST00000572290 ZMYM2Q9UBW7 1377 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 NPHP3-ACAD11A0A0J9YXS1 232 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 FSD2A1L4K1 749 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 HIDE1A8MVS5 230 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 NRP1O14786 923 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 SLC16A4O15374 487 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 NDUFV1P49821 464 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 CACNB1Q02641 598 aaPredicted RBP22.16■■□□□ 1.14
NUP88-204ENST00000572290 SMC1AQ14683 1233 aaKnown RBP22.16■■□□□ 1.14
NUP88-204ENST00000572290 DUSP6Q16828 381 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 DCAF4L1Q3SXM0 396 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 USP49Q70CQ1 688 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 DDX53Q86TM3 631 aaKnown RBP22.16■■□□□ 1.14
NUP88-204ENST00000572290 GPBP1Q86WP2 473 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 VPS52Q8N1B4 723 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 CLIC6Q96NY7 704 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 NECAB3Q96P71 396 aaPredicted RBP22.16■■□□□ 1.14
NUP88-204ENST00000572290 SNTG2Q9NY99 539 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 KLK14Q9P0G3 267 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 VCANP13611 3396 aa22.16■■□□□ 1.14
NUP88-204ENST00000572290 GRXCR2A6NFK2 248 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 TBX10O75333 385 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 OR1G1P47890 313 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 NASPP49321 788 aaPredicted RBP22.15■■□□□ 1.14
NUP88-204ENST00000572290 SMTNP53814 917 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 DSC1Q08554 894 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 MCM6Q14566 821 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 TAS1R3Q7RTX0 852 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 APBB1IPQ7Z5R6 666 aaPredicted RBP22.15■■□□□ 1.14
NUP88-204ENST00000572290 COLGALT2Q8IYK4 626 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 MRPL43Q8N983 215 aaKnown RBP22.15■■□□□ 1.14
NUP88-204ENST00000572290 SPRYD3Q8NCJ5 442 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 GSTCDQ8NEC7 633 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 ZNF396Q96N95 335 aaPredicted RBP22.15■■□□□ 1.14
NUP88-204ENST00000572290 RPS6KC1Q96S38 1066 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 MRPL4Q9BYD3 311 aaKnown RBP22.15■■□□□ 1.14
NUP88-204ENST00000572290 ZBP1Q9H171 429 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 LARSQ9P2J5 1176 aaKnown RBP22.15■■□□□ 1.14
NUP88-204ENST00000572290 CCDC39Q9UFE4 941 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 ODF2LQ9ULJ1 636 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 TNFSF13BQ9Y275 285 aa22.15■■□□□ 1.14
NUP88-204ENST00000572290 NR1I2O75469 434 aa22.14■■□□□ 1.13
NUP88-204ENST00000572290 CXCL14O95715 111 aa22.14■■□□□ 1.13
NUP88-204ENST00000572290 CA8P35219 290 aa22.14■■□□□ 1.13
NUP88-204ENST00000572290 TXLNAP40222 546 aa22.14■■□□□ 1.13
NUP88-204ENST00000572290 GRIK3Q13003 919 aa22.14■■□□□ 1.13
NUP88-204ENST00000572290 STK38Q15208 465 aa22.14■■□□□ 1.13
NUP88-204ENST00000572290 FOXD4L5Q5VV16 416 aaPredicted RBP22.14■■□□□ 1.13
NUP88-204ENST00000572290 KRI1Q8N9T8 703 aaKnown RBP22.14■■□□□ 1.13
NUP88-204ENST00000572290 FOXD4L4Q8WXT5 416 aaPredicted RBP22.14■■□□□ 1.13
NUP88-204ENST00000572290 LARP4BQ92615 738 aaKnown RBP22.14■■□□□ 1.13
NUP88-204ENST00000572290 ACO2Q99798 780 aaKnown RBP22.14■■□□□ 1.13
NUP88-204ENST00000572290 STK39Q9UEW8 545 aa22.14■■□□□ 1.13
NUP88-204ENST00000572290 FAM50BQ9Y247 325 aa22.14■■□□□ 1.13
NUP88-204ENST00000572290 PRG3Q9Y2Y8 225 aaPredicted RBP22.14■■□□□ 1.13
NUP88-204ENST00000572290 TNFRSF10AO00220 468 aa22.13■■□□□ 1.13
NUP88-204ENST00000572290 RECQL4O94761 1208 aa22.13■■□□□ 1.13
NUP88-204ENST00000572290 GLP2RO95838 553 aa22.13■■□□□ 1.13
NUP88-204ENST00000572290 KRT18P05783 430 aaKnown RBP22.13■■□□□ 1.13
NUP88-204ENST00000572290 ZSCAN22P10073 491 aaPredicted RBP22.13■■□□□ 1.13
NUP88-204ENST00000572290 CTSAP10619 480 aa22.13■■□□□ 1.13
NUP88-204ENST00000572290 IL9P15248 144 aa22.13■■□□□ 1.13
NUP88-204ENST00000572290 DDIT3P35638 169 aa22.13■■□□□ 1.13
NUP88-204ENST00000572290 STRN3Q13033 797 aa22.13■■□□□ 1.13
NUP88-204ENST00000572290 CLUL1Q15846 466 aa22.13■■□□□ 1.13
NUP88-204ENST00000572290 TMEM161BQ8NDZ6 487 aa22.13■■□□□ 1.13
NUP88-204ENST00000572290 REEP2Q9BRK0 252 aa22.13■■□□□ 1.13
NUP88-204ENST00000572290 TARS2Q9BW92 718 aaKnown RBP22.13■■□□□ 1.13
NUP88-204ENST00000572290 CLEC1BQ9P126 229 aa22.13■■□□□ 1.13
NUP88-204ENST00000572290 CD207Q9UJ71 328 aa22.13■■□□□ 1.13
NUP88-204ENST00000572290 C2orf71A6NGG8 1288 aa22.12■■□□□ 1.13
NUP88-204ENST00000572290 FAM13AO94988 1023 aa22.12■■□□□ 1.13
NUP88-204ENST00000572290 LINC00301Q8NCQ3 95 aa22.12■■□□□ 1.13
NUP88-204ENST00000572290 MSLNLQ96KJ4 702 aa22.12■■□□□ 1.13
NUP88-204ENST00000572290 VN1R3Q9BXE9 311 aa22.12■■□□□ 1.13
NUP88-204ENST00000572290 CDT1Q9H211 546 aa22.12■■□□□ 1.13
NUP88-204ENST00000572290 PTPRHQ9HD43 1115 aa22.12■■□□□ 1.13
NUP88-204ENST00000572290 MARCH5Q9NX47 278 aa22.12■■□□□ 1.13
NUP88-204ENST00000572290 TFIP11Q9UBB9 837 aaKnown RBP22.12■■□□□ 1.13
NUP88-204ENST00000572290 STK17AQ9UEE5 414 aa22.12■■□□□ 1.13
NUP88-204ENST00000572290 BARX2Q9UMQ3 279 aaPredicted RBP22.12■■□□□ 1.13
NUP88-204ENST00000572290 GDAQ9Y2T3 454 aa22.12■■□□□ 1.13
NUP88-204ENST00000572290 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.11■■□□□ 1.13
NUP88-204ENST00000572290 H0YCG3 227 aa22.11■■□□□ 1.13
NUP88-204ENST00000572290 F13A1P00488 732 aa22.11■■□□□ 1.13
NUP88-204ENST00000572290 SRGAP2BP0DMP2 458 aa22.11■■□□□ 1.13
NUP88-204ENST00000572290 MAPTP10636 758 aaKnown RBP22.11■■□□□ 1.13
NUP88-204ENST00000572290 RBM10P98175 930 aaKnown RBP22.11■■□□□ 1.13
NUP88-204ENST00000572290 GIT2Q14161 759 aa22.11■■□□□ 1.13
NUP88-204ENST00000572290 ZNF568Q3ZCX4 644 aa22.11■■□□□ 1.13
NUP88-204ENST00000572290 RRAGBQ5VZM2 374 aa22.11■■□□□ 1.13
NUP88-204ENST00000572290 MYCT1Q8N699 235 aa22.11■■□□□ 1.13
NUP88-204ENST00000572290 VN1R2Q8NFZ6 395 aa22.11■■□□□ 1.13
NUP88-204ENST00000572290 AUTS2Q8WXX7 1259 aa22.11■■□□□ 1.13
NUP88-204ENST00000572290 COLEC11Q9BWP8 271 aa22.11■■□□□ 1.13
NUP88-204ENST00000572290 PARVGQ9HBI0 331 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms