RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 MTA3Q9BTC8 594 aa20.31■□□□□ 0.84
CLK3-227ENST00000570296 COLEC11Q9BWP8 271 aa20.31■□□□□ 0.84
CLK3-227ENST00000570296 GLT8D2Q9H1C3 349 aa20.31■□□□□ 0.84
CLK3-227ENST00000570296 OSBPL3Q9H4L5 887 aa20.31■□□□□ 0.84
CLK3-227ENST00000570296 LHX6Q9UPM6 363 aa20.31■□□□□ 0.84
CLK3-227ENST00000570296 IGKV6-21A0A0C4DH24 114 aa20.3■□□□□ 0.84
CLK3-227ENST00000570296 SRRM3A6NNA2 597 aaPredicted RBP20.3■□□□□ 0.84
CLK3-227ENST00000570296 CHURC1-FNTBB4DL54 471 aa20.3■□□□□ 0.84
CLK3-227ENST00000570296 CYP3A4P08684 503 aa20.3■□□□□ 0.84
CLK3-227ENST00000570296 RPL17P18621 184 aaKnown RBP20.3■□□□□ 0.84
CLK3-227ENST00000570296 NCLP19338 710 aaKnown RBP20.3■□□□□ 0.84
CLK3-227ENST00000570296 FNTBP49356 437 aa20.3■□□□□ 0.84
CLK3-227ENST00000570296 TYW1BQ6NUM6 668 aa20.3■□□□□ 0.84
CLK3-227ENST00000570296 FUT10Q6P4F1 479 aa20.3■□□□□ 0.84
CLK3-227ENST00000570296 TMTC3Q6ZXV5 915 aa20.3■□□□□ 0.84
CLK3-227ENST00000570296 LONP2Q86WA8 852 aa20.3■□□□□ 0.84
CLK3-227ENST00000570296 TMTC2Q8N394 836 aa20.3■□□□□ 0.84
CLK3-227ENST00000570296 TMEM121BQ9BXQ6 578 aaPredicted RBP20.3■□□□□ 0.84
CLK3-227ENST00000570296 LNPKQ9C0E8 428 aa20.3■□□□□ 0.84
CLK3-227ENST00000570296 IL25Q9H293 177 aa20.3■□□□□ 0.84
CLK3-227ENST00000570296 HELZ2Q9BYK8 2649 aaKnown RBP20.3■□□□□ 0.84
CLK3-227ENST00000570296 LAMA1P25391 3075 aa20.3■□□□□ 0.84
CLK3-227ENST00000570296 F8W810 466 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 PAPSS2O95340 614 aaPredicted RBP20.29■□□□□ 0.84
CLK3-227ENST00000570296 C8AP07357 584 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 ZNF806P0C7X5 589 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 CLK2P49760 499 aaKnown RBP20.29■□□□□ 0.84
CLK3-227ENST00000570296 SATB1Q01826 763 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 RING1Q06587 406 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 SRSF5Q13243 272 aaKnown RBP20.29■□□□□ 0.84
CLK3-227ENST00000570296 SF3A2Q15428 464 aaKnown RBP20.29■□□□□ 0.84
CLK3-227ENST00000570296 CCDC82Q8N4S0 544 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 CNNM3Q8NE01 707 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 CRYGNQ8WXF5 182 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 GPR62Q9BZJ7 368 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 LMAN1LQ9HAT1 526 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 GDE1Q9NZC3 331 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 POLIQ9UNA4 740 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 TAF6LQ9Y6J9 622 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 COL4A2P08572 1712 aa20.29■□□□□ 0.84
CLK3-227ENST00000570296 SMG1Q96Q15 3661 aaKnown RBP20.29■□□□□ 0.84
CLK3-227ENST00000570296 MAST4O15021 2626 aa20.28■□□□□ 0.84
CLK3-227ENST00000570296 CCL16O15467 120 aa20.28■□□□□ 0.84
CLK3-227ENST00000570296 UBXN11Q5T124 520 aa20.28■□□□□ 0.84
CLK3-227ENST00000570296 PSAPL1Q6NUJ1 521 aa20.28■□□□□ 0.84
CLK3-227ENST00000570296 NFXL1Q6ZNB6 911 aa20.28■□□□□ 0.84
CLK3-227ENST00000570296 CEP68Q76N32 757 aa20.28■□□□□ 0.84
CLK3-227ENST00000570296 RHPN2Q8IUC4 686 aa20.28■□□□□ 0.84
CLK3-227ENST00000570296 SPEM1Q8N4L4 309 aa20.28■□□□□ 0.84
CLK3-227ENST00000570296 LOXL4Q96JB6 756 aa20.28■□□□□ 0.84
CLK3-227ENST00000570296 DISC1Q9NRI5 854 aa20.28■□□□□ 0.84
CLK3-227ENST00000570296 SUCLA2Q9P2R7 463 aaPredicted RBP20.28■□□□□ 0.84
CLK3-227ENST00000570296 CCDC69A6NI79 296 aa20.27■□□□□ 0.84
CLK3-227ENST00000570296 ITGA4P13612 1032 aa20.27■□□□□ 0.84
CLK3-227ENST00000570296 RXRAP19793 462 aa20.27■□□□□ 0.84
CLK3-227ENST00000570296 HDAC1Q13547 482 aaPredicted RBP20.27■□□□□ 0.84
CLK3-227ENST00000570296 PABPC1LQ4VXU2 614 aaKnown RBP20.27■□□□□ 0.84
CLK3-227ENST00000570296 CASC1Q6TDU7 716 aa20.27■□□□□ 0.84
CLK3-227ENST00000570296 FAM3CQ92520 227 aa20.27■□□□□ 0.84
CLK3-227ENST00000570296 ELSPBP1Q96BH3 223 aa20.27■□□□□ 0.84
CLK3-227ENST00000570296 NIFKQ9BYG3 293 aaKnown RBP20.27■□□□□ 0.84
CLK3-227ENST00000570296 ADAM33Q9BZ11 813 aa20.27■□□□□ 0.84
CLK3-227ENST00000570296 PLA2G2FQ9BZM2 168 aa20.27■□□□□ 0.84
CLK3-227ENST00000570296 RXFP3Q9NSD7 469 aa20.27■□□□□ 0.84
CLK3-227ENST00000570296 ADAM28Q9UKQ2 775 aa20.27■□□□□ 0.84
CLK3-227ENST00000570296 WASF3Q9UPY6 502 aa20.27■□□□□ 0.84
CLK3-227ENST00000570296 TICRRQ7Z2Z1 1910 aa20.26■□□□□ 0.83
CLK3-227ENST00000570296 ARL5CA6NH57 179 aa20.26■□□□□ 0.83
CLK3-227ENST00000570296 hCG_1984214I3L0E3 225 aa20.26■□□□□ 0.83
CLK3-227ENST00000570296 UGCGQ16739 394 aa20.26■□□□□ 0.83
CLK3-227ENST00000570296 PLEKHM2Q8IWE5 1019 aa20.26■□□□□ 0.83
CLK3-227ENST00000570296 ZNF713Q8N859 430 aaPredicted RBP20.26■□□□□ 0.83
CLK3-227ENST00000570296 NLRP4Q96MN2 994 aa20.26■□□□□ 0.83
CLK3-227ENST00000570296 CEP89Q96ST8 783 aa20.26■□□□□ 0.83
CLK3-227ENST00000570296 IFT122Q9HBG6 1241 aa20.26■□□□□ 0.83
CLK3-227ENST00000570296 IGSF10Q6WRI0 2623 aa20.26■□□□□ 0.83
CLK3-227ENST00000570296 SMCO2A6NFE2 343 aa20.25■□□□□ 0.83
CLK3-227ENST00000570296 TAF4O00268 1085 aa20.25■□□□□ 0.83
CLK3-227ENST00000570296 HOXA11P31270 313 aaPredicted RBP20.25■□□□□ 0.83
CLK3-227ENST00000570296 SFNP31947 248 aa20.25■□□□□ 0.83
CLK3-227ENST00000570296 MTERF2Q49AM1 385 aa20.25■□□□□ 0.83
CLK3-227ENST00000570296 FANCBQ8NB91 859 aa20.25■□□□□ 0.83
CLK3-227ENST00000570296 SMG8Q8ND04 991 aaKnown RBP20.25■□□□□ 0.83
CLK3-227ENST00000570296 ING5Q8WYH8 240 aa20.25■□□□□ 0.83
CLK3-227ENST00000570296 GAD1Q99259 594 aa20.25■□□□□ 0.83
CLK3-227ENST00000570296 ARRDC1-AS1Q9H2J1 176 aa20.25■□□□□ 0.83
CLK3-227ENST00000570296 BRD9Q9H8M2 597 aa20.25■□□□□ 0.83
CLK3-227ENST00000570296 TRPV5Q9NQA5 729 aa20.25■□□□□ 0.83
CLK3-227ENST00000570296 SEPT9Q9UHD8 586 aaPredicted RBP20.25■□□□□ 0.83
CLK3-227ENST00000570296 MRPS23Q9Y3D9 190 aaKnown RBP20.25■□□□□ 0.83
CLK3-227ENST00000570296 K7ESF4 209 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 SH2B2O14492 632 aaPredicted RBP20.24■□□□□ 0.83
CLK3-227ENST00000570296 EPN2O95208 641 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 CHRNB1P11230 501 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 MLH1P40692 756 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 JAK3P52333 1124 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 GAS6Q14393 721 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 UVSSAQ2YD98 709 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 XKR3Q5GH77 459 aa20.24■□□□□ 0.83
CLK3-227ENST00000570296 RTP2Q5QGT7 225 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms