RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 EME2A4GXA9 379 aaPredicted RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 RASSF10A6NK89 507 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 SMTNL1A8MU46 457 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 EIF3CLB5ME19 914 aaKnown RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 KIF2AO00139 706 aaPredicted RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 HMGCRP04035 888 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 ZNF888P0CJ79 500 aaPredicted RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 RPL17P18621 184 aaKnown RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 YY1P25490 414 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 ATICP31939 592 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 DDIT3P35638 169 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 ECE1P42892 770 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 ZNF132P52740 706 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 PPP2CBP62714 309 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 PPP2CAP67775 309 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 ZBED6P86452 979 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 CD83Q01151 205 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 NSUN2Q08J23 767 aaKnown RBP eCLIP3.66□□□□□ -1.82
VPS35-208ENST00000568612 USP10Q14694 798 aaKnown RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 KRT72Q14CN4 511 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 ZNF174Q15697 407 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 ARHGAP44Q17R89 818 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 ZNF827Q17R98 1081 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 TKFCQ3LXA3 575 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 CPLX2Q6PUV4 134 aaKnown RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 C11orf96Q7Z7L8 435 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 TADA2BQ86TJ2 420 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 JAZF1Q86VZ6 243 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 CLASRPQ8N2M8 674 aaKnown RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 SYNPOQ8N3V7 929 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 CHST13Q8NET6 341 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 B4GALNT2Q8NHY0 566 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 CALML6Q8TD86 181 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 PARD3BQ8TEW8 1205 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 TCP11Q8WWU5 503 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 N4BP2L2Q92802 583 aaPredicted RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 JAKMIP2Q96AA8 810 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 MBD6Q96DN6 1003 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 EIF3CQ99613 913 aaKnown RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 CARD11Q9BXL7 1154 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 FAM107BQ9H098 131 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 IFT122Q9HBG6 1241 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 BTBD7Q9P203 1132 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 RABL2AQ9UBK7 228 aaPredicted RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.66□□□□□ -1.82
VPS35-208ENST00000568612 ADAM29Q9UKF5 820 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 PTPN22Q9Y2R2 807 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 B3GALT1Q9Y5Z6 326 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 RB1CC1Q8TDY2 1594 aa3.66□□□□□ -1.82
VPS35-208ENST00000568612 POLA1P09884 1462 aaPredicted RBP3.66□□□□□ -1.82
VPS35-208ENST00000568612 VPS8Q8N3P4 1428 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 A0A1B0GUA9 196 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 TRIM64CA6NLI5 447 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 BOLA2-SMG1P6H3BVE0 249 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 TRAF5O00463 557 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 GAS7O60861 476 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 CUTAO60888 179 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 RFPL3O75679 317 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 BBOX1O75936 387 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 RTN3O95197 1032 aaPredicted RBP3.65□□□□□ -1.83
VPS35-208ENST00000568612 ZBTB48P10074 688 aaPredicted RBP3.65□□□□□ -1.83
VPS35-208ENST00000568612 TGFB3P10600 412 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 GPTP24298 496 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 SDHAP31040 664 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 CSF2RBP32927 897 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 NF2P35240 595 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 GCKP35557 465 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 EIF2B5Q13144 721 aaKnown RBP3.65□□□□□ -1.83
VPS35-208ENST00000568612 LAMB3Q13751 1172 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 DCTN1Q14203 1278 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 POSTNQ15063 836 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 CLPPQ16740 277 aaPredicted RBP3.65□□□□□ -1.83
VPS35-208ENST00000568612 KIAA0753Q2KHM9 967 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 RRP12Q5JTH9 1297 aaKnown RBP3.65□□□□□ -1.83
VPS35-208ENST00000568612 CATSPEREQ5SY80 951 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 FAAH2Q6GMR7 532 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 PACS1Q6VY07 963 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 UBE2Q1Q7Z7E8 422 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 KIAA1328Q86T90 577 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 TMEM110Q86TL2 294 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 MFN1Q8IWA4 741 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 FAM114A1Q8IWE2 563 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 REXO1L1PQ8IX06 675 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 LMNTD2Q8IXW0 634 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 NIM1KQ8IY84 436 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 RTKN2Q8IZC4 609 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 KIAA1958Q8N8K9 716 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 ARL10Q8N8L6 244 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 MIGA1Q8NAN2 632 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 ERMNQ8TAM6 284 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 FAM81AQ8TBF8 368 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 DLG3Q92796 817 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 EXOC4Q96A65 974 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 DTNBP1Q96EV8 351 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 LRRC37BQ96QE4 947 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 PTPN18Q99952 460 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 THUMPD2Q9BTF0 503 aaKnown RBP3.65□□□□□ -1.83
VPS35-208ENST00000568612 BTBD2Q9BX70 525 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 AMNQ9BXJ7 453 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 MAK16Q9BXY0 300 aaKnown RBP3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms