RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 AVPR1BP47901 424 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 GYS2P54840 703 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 FSCN1Q16658 493 aaKnown RBP4.06□□□□□ -1.76
VPS35-207ENST00000568191 C1QL3Q5VWW1 255 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 ZNF627Q7L945 461 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 GDF7Q7Z4P5 450 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 PLXDC1Q8IUK5 500 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 LCORLQ8N3X6 602 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 SUPT20HQ8NEM7 779 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 ZNF480Q8WV37 535 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 TFAP2CQ92754 450 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 REXO4Q9GZR2 422 aaKnown RBP4.06□□□□□ -1.76
VPS35-207ENST00000568191 KCTD10Q9H3F6 313 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 CAAP1Q9H8G2 361 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 USP35Q9P2H5 1018 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 EVLQ9UI08 416 aaPredicted RBP4.06□□□□□ -1.76
VPS35-207ENST00000568191 PACSIN3Q9UKS6 424 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 TMA7Q9Y2S6 64 aaKnown RBP4.06□□□□□ -1.76
VPS35-207ENST00000568191 A0A087X0B3 334 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 TBKBP1A7MCY6 615 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 ITGA10O75578 1167 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 BPIP17213 487 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 STRN3Q13033 797 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 ERCC6LQ2NKX8 1250 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 SPDYE7PQ495Y7 208 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 CT83Q5H943 113 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 PITRM1Q5JRX3 1037 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 ARMC6Q6NXE6 501 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 MSL3Q8N5Y2 521 aaKnown RBP4.05□□□□□ -1.76
VPS35-207ENST00000568191 OR10H5Q8NGA6 315 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 CHAC2Q8WUX2 184 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 FATE1Q969F0 183 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 EAF2Q96CJ1 260 aaPredicted RBP4.05□□□□□ -1.76
VPS35-207ENST00000568191 MYEOVQ96EZ4 313 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 TMX1Q9H3N1 280 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 GPRC5DQ9NZD1 345 aa4.05□□□□□ -1.76
VPS35-207ENST00000568191 GOLGA8AA7E2F4 631 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 GRXCR1A8MXD5 290 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 AKR1B10O60218 316 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 LPLP06858 475 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 ENPP1P22413 925 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 CTSSP25774 331 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 HSD3B2P26439 372 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 APOBEC3AP31941 199 aaPredicted RBP4.04□□□□□ -1.76
VPS35-207ENST00000568191 PTPN7P35236 360 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 PER3P56645 1201 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 BLOC1S1P78537 153 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 MRPS9P82933 396 aaKnown RBP4.04□□□□□ -1.76
VPS35-207ENST00000568191 NHLH2Q02577 135 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.04□□□□□ -1.76
VPS35-207ENST00000568191 RHOUQ7L0Q8 258 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 XYLT1Q86Y38 959 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 RPUSD2Q8IZ73 545 aaKnown RBP4.04□□□□□ -1.76
VPS35-207ENST00000568191 AUTS2Q8WXX7 1259 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 UHRF1Q96T88 793 aaPredicted RBP4.04□□□□□ -1.76
VPS35-207ENST00000568191 LSM14BQ9BX40 385 aaKnown RBP4.04□□□□□ -1.76
VPS35-207ENST00000568191 AKIP1Q9NQ31 210 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 TMPRSS11EQ9UL52 423 aa4.04□□□□□ -1.76
VPS35-207ENST00000568191 TLDC2A0PJX2 215 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 LCHNA4D1U4 455 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 NEMP1O14524 444 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 PJA2O43164 708 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 NDUFA10O95299 355 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 SNRPA1P09661 255 aaKnown RBP4.03□□□□□ -1.76
VPS35-207ENST00000568191 BMP5P22003 454 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 ECHS1P30084 290 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 BMPR1AP36894 532 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 FLT3LGP49771 235 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 RNASE9P60153 205 aaKnown RBP4.03□□□□□ -1.76
VPS35-207ENST00000568191 NANOS3P60323 173 aaKnown RBP4.03□□□□□ -1.76
VPS35-207ENST00000568191 GUCY1B3Q02153 619 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 TRIM25Q14258 630 aaKnown RBP4.03□□□□□ -1.76
VPS35-207ENST00000568191 BMT2Q1RMZ1 405 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 MUM1L1Q5H9M0 696 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 RRP12Q5JTH9 1297 aaKnown RBP4.03□□□□□ -1.76
VPS35-207ENST00000568191 MBNL2Q5VZF2 373 aaKnown RBP4.03□□□□□ -1.76
VPS35-207ENST00000568191 BTNL9Q6UXG8 535 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 ABHD15Q6UXT9 468 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 GPRIN1Q7Z2K8 1008 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 GPR156Q8NFN8 814 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 MDM1Q8TC05 714 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 CAVIN3Q969G5 261 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 CPEB1Q9BZB8 566 aaKnown RBP4.03□□□□□ -1.76
VPS35-207ENST00000568191 MS4A5Q9H3V2 200 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 TOPORSQ9NS56 1045 aaPredicted RBP4.03□□□□□ -1.76
VPS35-207ENST00000568191 MOCS1Q9NZB8 636 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 RNF181Q9P0P0 153 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 DPP7Q9UHL4 492 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 ZNHIT2Q9UHR6 403 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 ATP11BQ9Y2G3 1177 aa4.03□□□□□ -1.76
VPS35-207ENST00000568191 NUDT3O95989 172 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 IL2RBP14784 551 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 CNGA1P29973 690 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 SLC5A3P53794 718 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 CLRN1P58418 232 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 CDK17Q00537 523 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 ANO4Q32M45 955 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 FAM47AQ5JRC9 791 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 ATXN7L2Q5T6C5 722 aaPredicted RBP4.02□□□□□ -1.77
VPS35-207ENST00000568191 STRIP1Q5VSL9 837 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms