RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CSPP1Q1MSJ5 1256 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 MAP4K3Q8IVH8 894 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 TMEM192Q8IY95 271 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 FIBCD1Q8N539 461 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 TMEM117Q9H0C3 514 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 SNTG2Q9NY99 539 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 KLK14Q9P0G3 267 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 INPP5FQ9Y2H2 1132 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 TDRD15B5MCY1 1934 aaKnown RBP21.44■■□□□ 1.02
CLN3-225ENST00000566824 H0YCG3 227 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 B4GALT3O60512 393 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 PRPF6O94906 941 aaKnown RBP21.44■■□□□ 1.02
CLN3-225ENST00000566824 GCNT3O95395 438 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 HARSP12081 509 aaKnown RBP21.44■■□□□ 1.02
CLN3-225ENST00000566824 HOXD13P35453 343 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 ZNF568Q3ZCX4 644 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 SEZ6Q53EL9 994 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 ZNF697Q5TEC3 545 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 DEFB123Q8N688 67 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 ERCC4Q92889 916 aaPredicted RBP21.44■■□□□ 1.02
CLN3-225ENST00000566824 ZFP42Q96MM3 310 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 TRIM6Q9C030 488 aaPredicted RBP21.44■■□□□ 1.02
CLN3-225ENST00000566824 CWH43Q9H720 699 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 TYW1Q9NV66 732 aaKnown RBP21.44■■□□□ 1.02
CLN3-225ENST00000566824 MIOSQ9NXC5 875 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 ANKFY1Q9P2R3 1169 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 CDH23Q9H251 3354 aa21.44■■□□□ 1.02
CLN3-225ENST00000566824 PVALEFA0A1B0GWK0 134 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 MEFVO15553 781 aaPredicted RBP21.43■■□□□ 1.02
CLN3-225ENST00000566824 PIGRP01833 764 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 ERVK-21P61565 698 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 PNOCQ13519 176 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 KMT5BQ4FZB7 885 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 FAM26FQ5R3K3 315 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 L1TD1Q5T7N2 865 aaKnown RBP21.43■■□□□ 1.02
CLN3-225ENST00000566824 GPR153Q6NV75 609 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 MPZL3Q6UWV2 235 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 ZPBP2Q6X784 338 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 EPM2AIP1Q7L775 607 aaPredicted RBP21.43■■□□□ 1.02
CLN3-225ENST00000566824 ARNTL2Q8WYA1 636 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 PGBD4Q96DM1 585 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 BICD1Q96G01 975 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 GAD1Q99259 594 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 RSAD1Q9HA92 442 aa21.43■■□□□ 1.02
CLN3-225ENST00000566824 TOM1L1O75674 476 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 RPN1P04843 607 aaKnown RBP21.42■■□□□ 1.02
CLN3-225ENST00000566824 MLH1P40692 756 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 OSTNP61366 133 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 DCAF4L1Q3SXM0 396 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 ZBTB41Q5SVQ8 909 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 GSTCDQ8NEC7 633 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 CLP1Q92989 425 aaKnown RBP21.42■■□□□ 1.02
CLN3-225ENST00000566824 GUCD1Q96NT3 240 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 TGS1Q96RS0 853 aaKnown RBP21.42■■□□□ 1.02
CLN3-225ENST00000566824 ADPGKQ9BRR6 497 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 TCHPQ9BT92 498 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 PRDM12Q9H4Q4 367 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 SLC39A2Q9NP94 309 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 RNF216Q9NWF9 866 aaPredicted RBP21.42■■□□□ 1.02
CLN3-225ENST00000566824 PARP2Q9UGN5 583 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 GDAQ9Y2T3 454 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 CITO14578 2027 aa21.42■■□□□ 1.02
CLN3-225ENST00000566824 ZMYM2Q9UBW7 1377 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 TMEM265A0A087WTH1 108 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 ARL5CA6NH57 179 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 HNRNPDLO14979 420 aaKnown RBP21.41■■□□□ 1.02
CLN3-225ENST00000566824 HOXA2O43364 376 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 MCF2P10911 925 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 PBX3P40426 434 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 LIG4P49917 911 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 UBE2HP62256 183 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 MCL1Q07820 350 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 STK4Q13043 487 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 NOMO2Q5JPE7 1267 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 GLB1LQ6UWU2 654 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 ZNF280BQ86YH2 543 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 THNSL1Q8IYQ7 743 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 ABI1Q8IZP0 508 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 LMBRD1Q9NUN5 540 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 TBC1D13Q9NVG8 400 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 MTMR10Q9NXD2 777 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 PLAGL2Q9UPG8 496 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 PLXNA4Q9HCM2 1894 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 ATG2AQ2TAZ0 1938 aa21.41■■□□□ 1.02
CLN3-225ENST00000566824 FAM189A1O60320 539 aa21.4■■□□□ 1.02
CLN3-225ENST00000566824 RECQL4O94761 1208 aa21.4■■□□□ 1.02
CLN3-225ENST00000566824 POMCP01189 267 aa21.4■■□□□ 1.02
CLN3-225ENST00000566824 ADSSP30520 456 aa21.4■■□□□ 1.02
CLN3-225ENST00000566824 POSTNQ15063 836 aa21.4■■□□□ 1.02
CLN3-225ENST00000566824 EPC2Q52LR7 807 aa21.4■■□□□ 1.02
CLN3-225ENST00000566824 KIAA0895Q8NCT3 520 aa21.4■■□□□ 1.02
CLN3-225ENST00000566824 SLC17A8Q8NDX2 589 aa21.4■■□□□ 1.02
CLN3-225ENST00000566824 ZSWIM2Q8NEG5 633 aa21.4■■□□□ 1.02
CLN3-225ENST00000566824 HVCN1Q96D96 273 aa21.4■■□□□ 1.02
CLN3-225ENST00000566824 ACCSQ96QU6 501 aa21.4■■□□□ 1.02
CLN3-225ENST00000566824 PCDHB13Q9Y5F0 798 aa21.4■■□□□ 1.02
CLN3-225ENST00000566824 INPPL1O15357 1258 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 DDHD2O94830 711 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 SCP2P22307 547 aa21.39■■□□□ 1.01
CLN3-225ENST00000566824 TNFSF9P41273 254 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms