RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 CLIC2O15247 247 aa22.53■■□□□ 1.2
CLN3-212ENST00000564574 NR3C1P04150 777 aa22.53■■□□□ 1.2
CLN3-212ENST00000564574 SKIP12755 728 aa22.53■■□□□ 1.2
CLN3-212ENST00000564574 PMS1P54277 932 aaKnown RBP22.53■■□□□ 1.2
CLN3-212ENST00000564574 STX17P56962 302 aa22.53■■□□□ 1.2
CLN3-212ENST00000564574 FKBP3Q00688 224 aaKnown RBP22.53■■□□□ 1.2
CLN3-212ENST00000564574 UBXN11Q5T124 520 aa22.53■■□□□ 1.2
CLN3-212ENST00000564574 ZC3H3Q8IXZ2 948 aaKnown RBP22.53■■□□□ 1.2
CLN3-212ENST00000564574 ENOX1Q8TC92 643 aaKnown RBP22.53■■□□□ 1.2
CLN3-212ENST00000564574 ADAM2Q99965 735 aa22.53■■□□□ 1.2
CLN3-212ENST00000564574 MSTO1Q9BUK6 570 aa22.53■■□□□ 1.2
CLN3-212ENST00000564574 TRIM6Q9C030 488 aaPredicted RBP22.53■■□□□ 1.2
CLN3-212ENST00000564574 TSPYL2Q9H2G4 693 aaPredicted RBP22.53■■□□□ 1.2
CLN3-212ENST00000564574 DMAC2Q9NW81 257 aa22.53■■□□□ 1.2
CLN3-212ENST00000564574 HSPBP1Q9NZL4 362 aa22.53■■□□□ 1.2
CLN3-212ENST00000564574 AGO2Q9UKV8 859 aaKnown RBP22.53■■□□□ 1.2
CLN3-212ENST00000564574 ZMYND8Q9ULU4 1186 aaPredicted RBP22.53■■□□□ 1.2
CLN3-212ENST00000564574 MKI67P46013 3256 aaKnown RBP22.53■■□□□ 1.2
CLN3-212ENST00000564574 OGTO15294 1046 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 MGEA5O60502 916 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 EFCAB14O75071 495 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 NPTXRO95502 500 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 FGFR1OPO95684 399 aaKnown RBP22.52■■□□□ 1.2
CLN3-212ENST00000564574 ACTN1P12814 892 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 SYN1P17600 705 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 NR2F2P24468 414 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 ZNF165P49910 485 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 IKBKEQ14164 716 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 ZBTB33Q86T24 672 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 CDR2LQ86X02 465 aaPredicted RBP22.52■■□□□ 1.2
CLN3-212ENST00000564574 VWCEQ96DN2 955 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 LBHD1Q9BQE6 289 aaPredicted RBP22.52■■□□□ 1.2
CLN3-212ENST00000564574 CBWD1Q9BRT8 395 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 HAPLN2Q9GZV7 340 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 KIAA1586Q9HCI6 787 aa22.52■■□□□ 1.2
CLN3-212ENST00000564574 CETN3O15182 167 aa22.51■■□□□ 1.19
CLN3-212ENST00000564574 POU5F1Q01860 360 aaKnown RBP22.51■■□□□ 1.19
CLN3-212ENST00000564574 ADAM9Q13443 819 aa22.51■■□□□ 1.19
CLN3-212ENST00000564574 TPD52L1Q16890 204 aaPredicted RBP22.51■■□□□ 1.19
CLN3-212ENST00000564574 SLC24A5Q71RS6 500 aa22.51■■□□□ 1.19
CLN3-212ENST00000564574 HACE1Q8IYU2 909 aa22.51■■□□□ 1.19
CLN3-212ENST00000564574 GPD1LQ8N335 351 aa22.51■■□□□ 1.19
CLN3-212ENST00000564574 XXYLT1Q8NBI6 393 aa22.51■■□□□ 1.19
CLN3-212ENST00000564574 CEP63Q96MT8 703 aa22.51■■□□□ 1.19
CLN3-212ENST00000564574 MED15Q96RN5 788 aa22.51■■□□□ 1.19
CLN3-212ENST00000564574 DUSP9Q99956 384 aaKnown RBP22.51■■□□□ 1.19
CLN3-212ENST00000564574 EIF2AQ9BY44 585 aaKnown RBP22.51■■□□□ 1.19
CLN3-212ENST00000564574 PCIF1Q9H4Z3 704 aa22.51■■□□□ 1.19
CLN3-212ENST00000564574 FAM105AQ9NUU6 356 aa22.51■■□□□ 1.19
CLN3-212ENST00000564574 RNF216Q9NWF9 866 aaPredicted RBP22.51■■□□□ 1.19
CLN3-212ENST00000564574 CITO14578 2027 aa22.51■■□□□ 1.19
CLN3-212ENST00000564574 RALGAPA2Q2PPJ7 1873 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 A0A0U1RQF3 1178 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 ABHD14A-ACY1A0A1B0GW23 586 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 SMTNL1A8MU46 457 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 IKBKBO14920 756 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 EXTL3O43909 919 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 ZNF623O75123 536 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 BAIAP3O94812 1187 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 HARSP12081 509 aaKnown RBP22.5■■□□□ 1.19
CLN3-212ENST00000564574 GRM5P41594 1212 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 CYP2J2P51589 502 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 MYL5Q02045 173 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 SPATA1Q5VX52 437 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 PSRC1Q6PGN9 363 aaPredicted RBP22.5■■□□□ 1.19
CLN3-212ENST00000564574 CSGALNACT2Q8N6G5 542 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 NOC3LQ8WTT2 800 aaKnown RBP22.5■■□□□ 1.19
CLN3-212ENST00000564574 LINC01599Q8WXQ3 324 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 MKNK1Q9BUB5 465 aa22.5■■□□□ 1.19
CLN3-212ENST00000564574 C9IYK1 514 aa22.49■■□□□ 1.19
CLN3-212ENST00000564574 ENPP3O14638 875 aa22.49■■□□□ 1.19
CLN3-212ENST00000564574 MAPK13O15264 365 aa22.49■■□□□ 1.19
CLN3-212ENST00000564574 EXOC3O60645 756 aa22.49■■□□□ 1.19
CLN3-212ENST00000564574 TCTN1Q2MV58 587 aa22.49■■□□□ 1.19
CLN3-212ENST00000564574 LRRC55Q6ZSA7 311 aa22.49■■□□□ 1.19
CLN3-212ENST00000564574 MRPL10Q7Z7H8 261 aaKnown RBP22.49■■□□□ 1.19
CLN3-212ENST00000564574 RTN4RL1Q86UN2 441 aaPredicted RBP22.49■■□□□ 1.19
CLN3-212ENST00000564574 FAM200AQ8TCP9 573 aa22.49■■□□□ 1.19
CLN3-212ENST00000564574 FBXL18Q96ME1 805 aa22.49■■□□□ 1.19
CLN3-212ENST00000564574 FRMD4BQ9Y2L6 1034 aa22.49■■□□□ 1.19
CLN3-212ENST00000564574 PCDHB2Q9Y5E7 798 aa22.49■■□□□ 1.19
CLN3-212ENST00000564574 SLC16A3O15427 465 aaKnown RBP22.48■■□□□ 1.19
CLN3-212ENST00000564574 FAM189A1O60320 539 aa22.48■■□□□ 1.19
CLN3-212ENST00000564574 FAM189BP81408 668 aa22.48■■□□□ 1.19
CLN3-212ENST00000564574 FILIP1Q7Z7B0 1213 aa22.48■■□□□ 1.19
CLN3-212ENST00000564574 THNSL1Q8IYQ7 743 aa22.48■■□□□ 1.19
CLN3-212ENST00000564574 PGBD4Q96DM1 585 aa22.48■■□□□ 1.19
CLN3-212ENST00000564574 SAAL1Q96ER3 474 aa22.48■■□□□ 1.19
CLN3-212ENST00000564574 CCDC94Q9BW85 323 aaPredicted RBP22.48■■□□□ 1.19
CLN3-212ENST00000564574 ELAC1Q9H777 363 aaKnown RBP22.48■■□□□ 1.19
CLN3-212ENST00000564574 IPPQ9Y573 584 aa22.48■■□□□ 1.19
CLN3-212ENST00000564574 TTC3P53804 2025 aa22.48■■□□□ 1.19
CLN3-212ENST00000564574 ANK1P16157 1881 aa22.47■■□□□ 1.19
CLN3-212ENST00000564574 GNA14O95837 355 aa22.47■■□□□ 1.19
CLN3-212ENST00000564574 EOMESO95936 686 aa22.47■■□□□ 1.19
CLN3-212ENST00000564574 FGBP02675 491 aa22.47■■□□□ 1.19
CLN3-212ENST00000564574 CLTAP09496 248 aa22.47■■□□□ 1.19
CLN3-212ENST00000564574 ACRP10323 421 aa22.47■■□□□ 1.19
CLN3-212ENST00000564574 ECHDC2Q86YB7 292 aa22.47■■□□□ 1.19
CLN3-212ENST00000564574 AOPEPQ8N6M6 819 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms