RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 FOXD4L5Q5VV16 416 aaPredicted RBP14.73□□□□□ -0.05
CLK3-216ENST00000564468 FOXD4L4Q8WXT5 416 aaPredicted RBP14.73□□□□□ -0.05
CLK3-216ENST00000564468 PABPC5Q96DU9 382 aaKnown RBP14.73□□□□□ -0.05
CLK3-216ENST00000564468 CLIC6Q96NY7 704 aa14.73□□□□□ -0.05
CLK3-216ENST00000564468 RPS6KC1Q96S38 1066 aa14.73□□□□□ -0.05
CLK3-216ENST00000564468 KIFC3Q9BVG8 833 aa14.73□□□□□ -0.05
CLK3-216ENST00000564468 APOL6Q9BWW8 343 aa14.73□□□□□ -0.05
CLK3-216ENST00000564468 GBP3Q9H0R5 595 aa14.73□□□□□ -0.05
CLK3-216ENST00000564468 NXF3Q9H4D5 531 aaKnown RBP14.73□□□□□ -0.05
CLK3-216ENST00000564468 PDZD7Q9H5P4 517 aa14.73□□□□□ -0.05
CLK3-216ENST00000564468 UBE2ZQ9H832 354 aaPredicted RBP14.73□□□□□ -0.05
CLK3-216ENST00000564468 NGRNQ9NPE2 291 aaKnown RBP14.73□□□□□ -0.05
CLK3-216ENST00000564468 PARP2Q9UGN5 583 aa14.73□□□□□ -0.05
CLK3-216ENST00000564468 TNFSF13BQ9Y275 285 aa14.73□□□□□ -0.05
CLK3-216ENST00000564468 HES2Q9Y543 173 aa14.73□□□□□ -0.05
CLK3-216ENST00000564468 ARL5CA6NH57 179 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 SFI1A8K8P3 1242 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 PI4K2BG5E9Z4 385 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 SLC16A4O15374 487 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 TBCAO75347 108 aaKnown RBP14.72□□□□□ -0.05
CLK3-216ENST00000564468 FAM13AO94988 1023 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 POMCP01189 267 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 GALTP07902 379 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 MLH1P40692 756 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 ARSHQ5FYA8 562 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 SPECC1Q5M775 1068 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 TMC7Q7Z402 723 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 CDR2LQ86X02 465 aaPredicted RBP14.72□□□□□ -0.05
CLK3-216ENST00000564468 KCNG4Q8TDN1 519 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 GAD1Q99259 594 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 CDCA3Q99618 268 aaPredicted RBP14.72□□□□□ -0.05
CLK3-216ENST00000564468 PARVGQ9HBI0 331 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 ENTPD7Q9NQZ7 604 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 TFIP11Q9UBB9 837 aaKnown RBP14.72□□□□□ -0.05
CLK3-216ENST00000564468 FAN1Q9Y2M0 1017 aa14.72□□□□□ -0.05
CLK3-216ENST00000564468 NT5C1B-RDH14C9J2C7 533 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 CUTAO60888 179 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 CSPG5O95196 566 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 AKAP5P24588 427 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 PBX3P40426 434 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 HYAL1Q12794 435 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 PUS10Q3MIT2 529 aaKnown RBP14.71□□□□□ -0.05
CLK3-216ENST00000564468 NT5DC1Q5TFE4 455 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 EP400NLQ6ZTU2 488 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 USP49Q70CQ1 688 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 SV2BQ7L1I2 683 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 ZNF280BQ86YH2 543 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 MYCT1Q8N699 235 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 IGSF21Q96ID5 467 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 ACO2Q99798 780 aaKnown RBP14.71□□□□□ -0.05
CLK3-216ENST00000564468 TCF25Q9BQ70 676 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 REEP2Q9BRK0 252 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 RNF39Q9H2S5 420 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 TLE6Q9H808 572 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 CLDND1Q9NY35 253 aa14.71□□□□□ -0.05
CLK3-216ENST00000564468 NPHP3-ACAD11A0A0J9YXS1 232 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 TTLL13PA6NNM8 815 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 FSCN2O14926 492 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 DDHD2O94830 711 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 ALADP13716 330 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 KCNA5P22460 613 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 IRS1P35568 1242 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 STAT6P42226 847 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 SLC11A1P49279 550 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 SCNN1GP51170 649 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 ZNF131P52739 623 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 NCKAP1LP55160 1127 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 ERVFC1P60507 584 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 GRIK3Q13003 919 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 GIT2Q14161 759 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 SMC1AQ14683 1233 aaKnown RBP14.7□□□□□ -0.06
CLK3-216ENST00000564468 COL19A1Q14993 1142 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 DDX53Q86TM3 631 aaKnown RBP14.7□□□□□ -0.06
CLK3-216ENST00000564468 TMEM161BQ8NDZ6 487 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 KCNN1Q92952 543 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 TCHPQ9BT92 498 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 CCDC94Q9BW85 323 aaPredicted RBP14.7□□□□□ -0.06
CLK3-216ENST00000564468 LRRC27Q9C0I9 530 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 ZHX3Q9H4I2 956 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 IGFLR1Q9H665 355 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 SNTG2Q9NY99 539 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 DNAJB4Q9UDY4 337 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 FAM50BQ9Y247 325 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 ATP6V1DQ9Y5K8 247 aa14.7□□□□□ -0.06
CLK3-216ENST00000564468 PRR33A8MZF0 331 aa14.69□□□□□ -0.06
CLK3-216ENST00000564468 NRP1O14786 923 aa14.69□□□□□ -0.06
CLK3-216ENST00000564468 TRAK2O60296 914 aa14.69□□□□□ -0.06
CLK3-216ENST00000564468 EDN1P05305 212 aa14.69□□□□□ -0.06
CLK3-216ENST00000564468 SRGAP2BP0DMP2 458 aa14.69□□□□□ -0.06
CLK3-216ENST00000564468 MAPTP10636 758 aaKnown RBP14.69□□□□□ -0.06
CLK3-216ENST00000564468 MCF2P10911 925 aa14.69□□□□□ -0.06
CLK3-216ENST00000564468 OR1G1P47890 313 aa14.69□□□□□ -0.06
CLK3-216ENST00000564468 NRIP1P48552 1158 aa14.69□□□□□ -0.06
CLK3-216ENST00000564468 AFF1P51825 1210 aaKnown RBP14.69□□□□□ -0.06
CLK3-216ENST00000564468 YARSP54577 528 aaKnown RBP14.69□□□□□ -0.06
CLK3-216ENST00000564468 CACNB1Q02641 598 aaPredicted RBP14.69□□□□□ -0.06
CLK3-216ENST00000564468 DSC1Q08554 894 aa14.69□□□□□ -0.06
CLK3-216ENST00000564468 CTC1Q2NKJ3 1217 aa14.69□□□□□ -0.06
CLK3-216ENST00000564468 LEXMQ3ZCV2 418 aa14.69□□□□□ -0.06
CLK3-216ENST00000564468 ZNF568Q3ZCX4 644 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms