RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 GUCD1Q96NT3 240 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 CDX2Q99626 313 aaPredicted RBP9.74□□□□□ -0.85
VPS39-207ENST00000563692 POLR3FQ9H1D9 316 aaPredicted RBP9.74□□□□□ -0.85
VPS39-207ENST00000563692 ZNF576Q9H609 170 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 DHX33Q9H6R0 707 aaKnown RBP9.74□□□□□ -0.85
VPS39-207ENST00000563692 GPRC5CQ9NQ84 441 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 DMAC2Q9NW81 257 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 HDAC6Q9UBN7 1215 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 PHLPP2Q6ZVD8 1323 aa9.74□□□□□ -0.85
VPS39-207ENST00000563692 DENND3A2RUS2 1198 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 H3BRB1 525 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 MAPK13O15264 365 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 HBP1O60381 514 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 MAFO75444 373 aaPredicted RBP9.73□□□□□ -0.85
VPS39-207ENST00000563692 LGALS2P05162 132 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 CCDC175P0C221 793 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 SELPP16109 830 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 ATP2A2P16615 1042 aaKnown RBP9.73□□□□□ -0.85
VPS39-207ENST00000563692 NAMPTP43490 491 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 PTK7Q13308 1070 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 TARBP2Q15633 366 aaKnown RBP9.73□□□□□ -0.85
VPS39-207ENST00000563692 DCAF17Q5H9S7 520 aaPredicted RBP9.73□□□□□ -0.85
VPS39-207ENST00000563692 TCERG1LQ5VWI1 586 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 GBP6Q6ZN66 633 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 INTS8Q75QN2 995 aaKnown RBP9.73□□□□□ -0.85
VPS39-207ENST00000563692 LRRC8DQ7L1W4 858 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 USP37Q86T82 979 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 TMEM139Q8IV31 216 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 KSR1Q8IVT5 923 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 XXYLT1Q8NBI6 393 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 TMEM161BQ8NDZ6 487 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 DEPTORQ8TB45 409 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 ATP8B4Q8TF62 1192 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 PCYT2Q99447 389 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 DNAJC7Q99615 494 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 PBX4Q9BYU1 374 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 TUT1Q9H6E5 874 aaKnown RBP9.73□□□□□ -0.85
VPS39-207ENST00000563692 SLC28A3Q9HAS3 691 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 TRMT1Q9NXH9 659 aaKnown RBP9.73□□□□□ -0.85
VPS39-207ENST00000563692 ERAP1Q9NZ08 941 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 CXXC1Q9P0U4 656 aaPredicted RBP9.73□□□□□ -0.85
VPS39-207ENST00000563692 SIK3Q9Y2K2 1263 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 SCN10AQ9Y5Y9 1956 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 EMSYQ7Z589 1322 aa9.73□□□□□ -0.85
VPS39-207ENST00000563692 C17orf102A2RUQ5 167 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 GTPBP10A4D1E9 387 aaKnown RBP9.72□□□□□ -0.85
VPS39-207ENST00000563692 GRXCR1A8MXD5 290 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 K7ERI5 159 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 HAS3O00219 553 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 KIAA0391O15091 583 aaKnown RBP9.72□□□□□ -0.85
VPS39-207ENST00000563692 ASAP2O43150 1006 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 BAIAP3O94812 1187 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 IPO7O95373 1038 aaKnown RBP9.72□□□□□ -0.85
VPS39-207ENST00000563692 TNNT1P13805 278 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 FECHP22830 423 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 CYLC1P35663 651 aaPredicted RBP9.72□□□□□ -0.85
VPS39-207ENST00000563692 ARL2P36404 184 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 CYP2J2P51589 502 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 KRT83P78385 493 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 CDK17Q00537 523 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 MXD4Q14582 209 aaPredicted RBP9.72□□□□□ -0.85
VPS39-207ENST00000563692 ZNF484Q5JVG2 852 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 E4F1Q66K89 784 aaPredicted RBP9.72□□□□□ -0.85
VPS39-207ENST00000563692 SLFN12LQ6IEE8 588 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 MAP4K3Q8IVH8 894 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 CCDC170Q8IYT3 715 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 MAFAQ8NHW3 353 aaPredicted RBP9.72□□□□□ -0.85
VPS39-207ENST00000563692 MYLIPQ8WY64 445 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 KCNN1Q92952 543 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 BICD1Q96G01 975 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 BORCS6Q96GS4 357 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 SLC9A7Q96T83 725 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 GAS2L1Q99501 681 aaPredicted RBP9.72□□□□□ -0.85
VPS39-207ENST00000563692 C16orf70Q9BSU1 422 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 TTYH1Q9H313 450 aaPredicted RBP9.72□□□□□ -0.85
VPS39-207ENST00000563692 TMEM134Q9H6X4 195 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 KIAA1586Q9HCI6 787 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 XPNPEP1Q9NQW7 623 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 FAM207AQ9NSI2 230 aaPredicted RBP9.72□□□□□ -0.85
VPS39-207ENST00000563692 CEP72Q9P209 647 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 TRPC6Q9Y210 931 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 PPP2R2CQ9Y2T4 447 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 DAAM1Q9Y4D1 1078 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 TELO2Q9Y4R8 837 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 PAXBP1Q9Y5B6 917 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 ZMYM2Q9UBW7 1377 aa9.72□□□□□ -0.85
VPS39-207ENST00000563692 P4HA2O15460 535 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 MAGEB2O15479 319 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 N4BP1O75113 896 aaKnown RBP9.71□□□□□ -0.86
VPS39-207ENST00000563692 SMIM10L2AP0DMW4 78 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 SMIM10L2BP0DMW5 78 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 CKBP12277 381 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 GARTP22102 1010 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 THPOP40225 353 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 PBX2P40425 430 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 CASP4P49662 377 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 KLK7P49862 253 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 EFNA5P52803 228 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 KCNMA1Q12791 1236 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 TFDP1Q14186 410 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms