RNA–Protein interactions for RNA: ENST00000562219.1

BBS4-205, Transcript of Bardet-Biedl syndrome 4, human

TSL 1 (best)

Gene BBS4, Length 1,004 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BBS4-205	ENST00000562219	STK3	Q13188	491 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	TFDP1	Q14186	410 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	NCAPH2	Q6IBW4	605 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	POTED	Q86YR6	584 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	GPR65	Q8IYL9	337 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	SLFN12	Q8IYM2	578 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	HACE1	Q8IYU2	909 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	ZNF707	Q96C28	371 aa	Predicted RBP	11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	CPB2	Q96IY4	423 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	MYADM	Q96S97	322 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	TRIM6	Q9C030	488 aa	Predicted RBP	11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	CSRNP2	Q9H175	543 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	RNF39	Q9H2S5	420 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	NXF3	Q9H4D5	531 aa	Known RBP	11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	PLEKHA4	Q9H4M7	779 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	PIDD1	Q9HB75	910 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	XPNPEP1	Q9NQW7	623 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	CHST7	Q9NS84	486 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	RGL1	Q9NZL6	768 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	GIT1	Q9Y2X7	761 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	HES2	Q9Y543	173 aa		11.43	□□□□□ -0.58
BBS4-205	ENST00000562219	STK36	Q9NRP7	1315 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	NOTCH4	Q99466	2003 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219		F8W810	466 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	INO80B-WBP1	J3KQ70	363 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	STK25	O00506	426 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	EPB41L2	O43491	1005 aa	Known RBP	11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	TGM5	O43548	720 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	SPATA31D3	P0C874	917 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	MYB	P10242	640 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	XBP1	P17861	261 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	ID4	P47928	161 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	CREM	Q03060	361 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	MBTD1	Q05BQ5	628 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	POU5F1B	Q06416	359 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	CTTN	Q14247	550 aa	Known RBP	11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	USP41	Q3LFD5	358 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	SPATA31D4	Q6ZUB0	917 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	PIK3AP1	Q6ZUJ8	805 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	GET4	Q7L5D6	327 aa	Predicted RBP	11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	PALB2	Q86YC2	1186 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	SLC44A3	Q8N4M1	653 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	DYDC2	Q96IM9	177 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	B3GALT6	Q96L58	329 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	LARP6	Q9BRS8	491 aa	Known RBP	11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	COLEC11	Q9BWP8	271 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	APOL6	Q9BWW8	343 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	NFKBIZ	Q9BYH8	718 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	TM6SF1	Q9BZW5	370 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	NT5C3A	Q9H0P0	336 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	SEMA4A	Q9H3S1	761 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	TBC1D17	Q9HA65	648 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	ZDHHC7	Q9NXF8	308 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	ADAM28	Q9UKQ2	775 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	CA14	Q9ULX7	337 aa		11.42	□□□□□ -0.58
BBS4-205	ENST00000562219	OTOGL	Q3ZCN5	2332 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	ZBTB39	O15060	712 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	DGAT1	O75907	488 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	LAMP2	P13473	410 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	ARF4	P18085	180 aa	Predicted RBP	11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	GRIK3	Q13003	919 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	HTR4	Q13639	388 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	CAPS	Q13938	189 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	AMHR2	Q16671	573 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	PHLDB3	Q6NSJ2	640 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	FUT10	Q6P4F1	479 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	TPH2	Q8IWU9	490 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	GSTCD	Q8NEC7	633 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	OXER1	Q8TDS5	423 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	GPR152	Q8TDT2	470 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	ASAP3	Q8TDY4	903 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	GPR62	Q9BZJ7	368 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	PRKD2	Q9BZL6	878 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	ARHGEF3	Q9NR81	526 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	MIOS	Q9NXC5	875 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	FNIP2	Q9P278	1114 aa		11.41	□□□□□ -0.58
BBS4-205	ENST00000562219	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	CIT	O14578	2027 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	ANHX	E9PGG2	379 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	B4GALT5	O43286	388 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	SLITRK3	O94933	977 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	LYPLA2	O95372	231 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	BAG4	O95429	457 aa	Known RBP	11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	LMNA	P02545	664 aa	Known RBP	11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	AKAP5	P24588	427 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	ARL2	P36404	184 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	SCRN1	Q12765	414 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	SLC27A1	Q6PCB7	646 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	LILRA6	Q6PI73	481 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	ZC3H14	Q6PJT7	736 aa	Known RBP	11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	GLYCTK	Q8IVS8	523 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	KCNG4	Q8TDN1	519 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	RIN2	Q8WYP3	895 aa	Predicted RBP	11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	CCDC43	Q96MW1	224 aa	Known RBP	11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	SLC2A4RG	Q9NR83	387 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	ANKEF1	Q9NU02	776 aa		11.4	□□□□□ -0.58
BBS4-205	ENST00000562219	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	11.4	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms