RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PRG3Q9Y2Y8 225 aaPredicted RBP18.29■□□□□ 0.52
CLN3-208ENST00000561505 CLUHO75153 1309 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 F8W810 466 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 GLUD1P00367 558 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 FDPSP14324 419 aaKnown RBP18.28■□□□□ 0.52
CLN3-208ENST00000561505 OR1G1P47890 313 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 SCNN1GP51170 649 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 AK2P54819 239 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 TFDP1Q14186 410 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 ELMSAN1Q6PJG2 1045 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 POTEGQ6S5H5 508 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 DTWD2Q8NBA8 298 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 ASAP3Q8TDY4 903 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 STAMQ92783 540 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 MYADMQ96S97 322 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 EIF2AK1Q9BQI3 630 aaKnown RBP18.28■□□□□ 0.52
CLN3-208ENST00000561505 GPR62Q9BZJ7 368 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 NT5C3AQ9H0P0 336 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 TPCN1Q9ULQ1 816 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 HES2Q9Y543 173 aa18.28■□□□□ 0.52
CLN3-208ENST00000561505 DOCK8Q8NF50 2099 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 KRBA1A5PL33 1030 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 FAM205CA6NFA0 338 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 ANHXE9PGG2 379 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 C2CD2LO14523 706 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 RFPL2O75678 378 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 BAG4O95429 457 aaKnown RBP18.27■□□□□ 0.52
CLN3-208ENST00000561505 GLRA2P23416 452 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 CYP4A11Q02928 519 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 NCBP1Q09161 790 aaKnown RBP18.27■□□□□ 0.52
CLN3-208ENST00000561505 NCAPH2Q6IBW4 605 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 PPP4R3CPQ6ZMV5 832 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 FRMD5Q7Z6J6 570 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 NKD2Q969F2 451 aaPredicted RBP18.27■□□□□ 0.52
CLN3-208ENST00000561505 CPB2Q96IY4 423 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 COLEC11Q9BWP8 271 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 BMP2KQ9NSY1 1161 aaPredicted RBP18.27■□□□□ 0.52
CLN3-208ENST00000561505 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.27■□□□□ 0.52
CLN3-208ENST00000561505 PCDHA12Q9UN75 941 aa18.27■□□□□ 0.52
CLN3-208ENST00000561505 MTCL1Q9Y4B5 1905 aaKnown RBP18.27■□□□□ 0.51
CLN3-208ENST00000561505 WDR87Q6ZQQ6 2873 aa18.27■□□□□ 0.51
CLN3-208ENST00000561505 INO80B-WBP1J3KQ70 363 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 TGM5O43548 720 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 NARSO43776 548 aaKnown RBP18.26■□□□□ 0.51
CLN3-208ENST00000561505 NR1I2O75469 434 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 SRFP11831 508 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 LAMP2P13473 410 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 RARRES1P49788 294 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 NR5A1Q13285 461 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 ANGPT1Q15389 498 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 USP41Q3LFD5 358 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 PHLDB3Q6NSJ2 640 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 FUT10Q6P4F1 479 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 SLC27A1Q6PCB7 646 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 TPH2Q8IWU9 490 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 SIX5Q8N196 739 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 FLCNQ8NFG4 579 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 MTMR9Q96QG7 549 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 PRKD2Q9BZL6 878 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 NXF3Q9H4D5 531 aaKnown RBP18.26■□□□□ 0.51
CLN3-208ENST00000561505 DLGAP2Q9P1A6 1054 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 DAXXQ9UER7 740 aaPredicted RBP18.26■□□□□ 0.51
CLN3-208ENST00000561505 ADAM28Q9UKQ2 775 aa18.26■□□□□ 0.51
CLN3-208ENST00000561505 GRIK3Q13003 919 aa18.25■□□□□ 0.51
CLN3-208ENST00000561505 FAM187BQ17R55 369 aa18.25■□□□□ 0.51
CLN3-208ENST00000561505 RSAD2Q8WXG1 361 aa18.25■□□□□ 0.51
CLN3-208ENST00000561505 SMG7Q92540 1137 aaKnown RBP18.25■□□□□ 0.51
CLN3-208ENST00000561505 PRIMPOLQ96LW4 560 aa18.25■□□□□ 0.51
CLN3-208ENST00000561505 SEMA4AQ9H3S1 761 aa18.25■□□□□ 0.51
CLN3-208ENST00000561505 FZD8Q9H461 694 aa18.25■□□□□ 0.51
CLN3-208ENST00000561505 SLC2A4RGQ9NR83 387 aa18.25■□□□□ 0.51
CLN3-208ENST00000561505 ZFP37Q9Y6Q3 630 aaPredicted RBP18.25■□□□□ 0.51
CLN3-208ENST00000561505 TDRD15B5MCY1 1934 aaKnown RBP18.24■□□□□ 0.51
CLN3-208ENST00000561505 B4GALT5O43286 388 aa18.24■□□□□ 0.51
CLN3-208ENST00000561505 ZMYND10O75800 440 aa18.24■□□□□ 0.51
CLN3-208ENST00000561505 CREMQ03060 361 aa18.24■□□□□ 0.51
CLN3-208ENST00000561505 NAB2Q15742 525 aa18.24■□□□□ 0.51
CLN3-208ENST00000561505 CDCA2Q69YH5 1023 aaPredicted RBP18.24■□□□□ 0.51
CLN3-208ENST00000561505 HACE1Q8IYU2 909 aa18.24■□□□□ 0.51
CLN3-208ENST00000561505 WASF1Q92558 559 aa18.24■□□□□ 0.51
CLN3-208ENST00000561505 TTC12Q9H892 705 aaPredicted RBP18.24■□□□□ 0.51
CLN3-208ENST00000561505 ORC3Q9UBD5 711 aaPredicted RBP18.24■□□□□ 0.51
CLN3-208ENST00000561505 CACNA1AO00555 2505 aa18.24■□□□□ 0.51
CLN3-208ENST00000561505 SPDYE4A6NLX3 237 aa18.23■□□□□ 0.51
CLN3-208ENST00000561505 WNT7AO00755 349 aa18.23■□□□□ 0.51
CLN3-208ENST00000561505 MARCH6O60337 910 aa18.23■□□□□ 0.51
CLN3-208ENST00000561505 POU2F2P09086 479 aa18.23■□□□□ 0.51
CLN3-208ENST00000561505 SPATA31C1P0DKV0 1188 aa18.23■□□□□ 0.51
CLN3-208ENST00000561505 AKAP5P24588 427 aa18.23■□□□□ 0.51
CLN3-208ENST00000561505 GBP2P32456 591 aaPredicted RBP18.23■□□□□ 0.51
CLN3-208ENST00000561505 KRT2P35908 639 aa18.23■□□□□ 0.51
CLN3-208ENST00000561505 ANAPC15P60006 121 aa18.23■□□□□ 0.51
CLN3-208ENST00000561505 HTR4Q13639 388 aa18.23■□□□□ 0.51
CLN3-208ENST00000561505 PIK3R5Q8WYR1 880 aa18.23■□□□□ 0.51
CLN3-208ENST00000561505 FBXL21Q9UKT6 434 aa18.23■□□□□ 0.51
CLN3-208ENST00000561505 HOXA9P31269 272 aa18.22■□□□□ 0.51
CLN3-208ENST00000561505 TUSC3Q13454 348 aa18.22■□□□□ 0.51
CLN3-208ENST00000561505 CALCRLQ16602 461 aa18.22■□□□□ 0.51
CLN3-208ENST00000561505 PALB2Q86YC2 1186 aa18.22■□□□□ 0.51
CLN3-208ENST00000561505 B3GALT6Q96L58 329 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms