RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 COL4A3BPQ9Y5P4 624 aa15.52■□□□□ 0.08
LDLR-213ENST00000560502 PTPRZ1P23471 2315 aaPredicted RBP15.51■□□□□ 0.07
LDLR-213ENST00000560502 TDRD15B5MCY1 1934 aaKnown RBP15.51■□□□□ 0.07
LDLR-213ENST00000560502 CNTNAP2Q9UHC6 1331 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 PROB1E7EW31 1015 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 GFRA3O60609 400 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 LILRB3O75022 631 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 DDHD2O94830 711 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 GCFC2P16383 781 aaKnown RBP15.51■□□□□ 0.07
LDLR-213ENST00000560502 HOXA11P31270 313 aaPredicted RBP15.51■□□□□ 0.07
LDLR-213ENST00000560502 PRPHP41219 470 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 AFF1P51825 1210 aaKnown RBP15.51■□□□□ 0.07
LDLR-213ENST00000560502 RNASELQ05823 741 aaKnown RBP15.51■□□□□ 0.07
LDLR-213ENST00000560502 EARS2Q5JPH6 523 aaKnown RBP15.51■□□□□ 0.07
LDLR-213ENST00000560502 L1TD1Q5T7N2 865 aaKnown RBP15.51■□□□□ 0.07
LDLR-213ENST00000560502 RESP18Q5W5W9 173 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 LRSAM1Q6UWE0 723 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 RBM43Q6ZSC3 357 aaKnown RBP15.51■□□□□ 0.07
LDLR-213ENST00000560502 SRGAP1Q7Z6B7 1085 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 GPR149Q86SP6 731 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 PPFIBP1Q86W92 1011 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 PLCD3Q8N3E9 789 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 ENGASEQ8NFI3 743 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 ATOH1Q92858 354 aaPredicted RBP15.51■□□□□ 0.07
LDLR-213ENST00000560502 FAM20AQ96MK3 541 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 TIGD1Q96MW7 591 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 KLHL5Q96PQ7 755 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 PYM1Q9BRP8 204 aaKnown RBP15.51■□□□□ 0.07
LDLR-213ENST00000560502 TMEM175Q9BSA9 504 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 GBP3Q9H0R5 595 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 SFXN1Q9H9B4 322 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 FAM13BQ9NYF5 915 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 LIMD1Q9UGP4 676 aa15.51■□□□□ 0.07
LDLR-213ENST00000560502 DBR1Q9UK59 544 aaKnown RBP15.51■□□□□ 0.07
LDLR-213ENST00000560502 DOCK8Q8NF50 2099 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 GOLGA6L3A6NEY3 463 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 FAM205CA6NFA0 338 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 H0Y858 1186 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 DKC1O60832 514 aaKnown RBP eCLIP15.5■□□□□ 0.07
LDLR-213ENST00000560502 RFC5P40937 340 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 CLCN4P51793 760 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 PPP4R3AQ6IN85 833 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 TMC5Q6UXY8 1006 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 CABP7Q86V35 215 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 ELOA2Q8IYF1 753 aaPredicted RBP15.5■□□□□ 0.07
LDLR-213ENST00000560502 FMR1NBQ8N0W7 255 aaPredicted RBP15.5■□□□□ 0.07
LDLR-213ENST00000560502 URGCPQ8TCY9 931 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 PRPF31Q8WWY3 499 aaKnown RBP15.5■□□□□ 0.07
LDLR-213ENST00000560502 PSPC1Q8WXF1 523 aaKnown RBP15.5■□□□□ 0.07
LDLR-213ENST00000560502 SLC7A3Q8WY07 619 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 TNMDQ9H2S6 317 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 RSAD1Q9HA92 442 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 STK39Q9UEW8 545 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 HPSEQ9Y251 543 aa15.5■□□□□ 0.07
LDLR-213ENST00000560502 MTCL1Q9Y4B5 1905 aaKnown RBP15.49■□□□□ 0.07
LDLR-213ENST00000560502 INPPL1O15357 1258 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 NR1I2O75469 434 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 EFEMP2O95967 443 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 P4HBP07237 508 aaKnown RBP15.49■□□□□ 0.07
LDLR-213ENST00000560502 CNPP09543 421 aaKnown RBP15.49■□□□□ 0.07
LDLR-213ENST00000560502 MARCKSP29966 332 aaPredicted RBP15.49■□□□□ 0.07
LDLR-213ENST00000560502 LAMTOR4Q0VGL1 99 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 LETM2Q2VYF4 491 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 C4orf19Q8IY42 314 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 EXOC8Q8IYI6 725 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 HAS1Q92839 578 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 TMEM143Q96AN5 459 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 CCDC34Q96HJ3 373 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 CEP170P1Q96L14 293 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 EMILIN2Q9BXX0 1053 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 MARCH5Q9NX47 278 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 GVINP1Q7Z2Y8 2422 aa15.49■□□□□ 0.07
LDLR-213ENST00000560502 SYCE3A1L190 88 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 TBX3O15119 743 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 GAS2O43903 313 aaKnown RBP15.48■□□□□ 0.07
LDLR-213ENST00000560502 PFKFB1P16118 471 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 LONP1P36776 959 aaKnown RBP15.48■□□□□ 0.07
LDLR-213ENST00000560502 SPIRE1Q08AE8 756 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 PTGDRQ13258 359 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 SNW1Q13573 536 aaKnown RBP15.48■□□□□ 0.07
LDLR-213ENST00000560502 EMC2Q15006 297 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 EPHA7Q15375 998 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 CWF19L1Q69YN2 538 aaKnown RBP15.48■□□□□ 0.07
LDLR-213ENST00000560502 ASTLQ6HA08 431 aaPredicted RBP15.48■□□□□ 0.07
LDLR-213ENST00000560502 SHC4Q6S5L8 630 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 CCDC149Q6ZUS6 474 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 RNF168Q8IYW5 571 aaPredicted RBP15.48■□□□□ 0.07
LDLR-213ENST00000560502 SMG8Q8ND04 991 aaKnown RBP15.48■□□□□ 0.07
LDLR-213ENST00000560502 CMASQ8NFW8 434 aaPredicted RBP15.48■□□□□ 0.07
LDLR-213ENST00000560502 LXNQ9BS40 222 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 HERC2P3Q9BVR0 1158 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 GOLPH3LQ9H4A5 285 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 KANSL3Q9P2N6 904 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 USP25Q9UHP3 1055 aa15.48■□□□□ 0.07
LDLR-213ENST00000560502 HOOK1Q9UJC3 728 aaKnown RBP15.48■□□□□ 0.07
LDLR-213ENST00000560502 NRP1O14786 923 aa15.47■□□□□ 0.07
LDLR-213ENST00000560502 SOD2P04179 222 aa15.47■□□□□ 0.07
LDLR-213ENST00000560502 SSBP05455 408 aaKnown RBP eCLIP15.47■□□□□ 0.07
LDLR-213ENST00000560502 SRGAP2CP0DJJ0 459 aa15.47■□□□□ 0.07
LDLR-213ENST00000560502 ATP2B1P20020 1258 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms