RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 MFSD14AQ96MC6 490 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 FAM213AQ9BRX8 229 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 TRPV6Q9H1D0 765 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 KIAA0100Q14667 2235 aaKnown RBP13.28□□□□□ -0.28
HERC1-205ENST00000559886 A0A1B0GUA9 196 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 A0A1W2PQC6 194 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 FAM189A1O60320 539 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 CHRNA1P02708 482 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 KRT13P13646 458 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 FGFR4P22455 802 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 SFPQP23246 707 aaKnown RBP eCLIP13.28□□□□□ -0.28
HERC1-205ENST00000559886 MGAT3Q09327 533 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 KCNH2Q12809 1159 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 NOLC1Q14978 699 aaKnown RBP eCLIP13.28□□□□□ -0.28
HERC1-205ENST00000559886 PTPN21Q16825 1174 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 TMEM132AQ24JP5 1023 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 CRELD2Q6UXH1 353 aaPredicted RBP13.28□□□□□ -0.28
HERC1-205ENST00000559886 CATSPER4Q7RTX7 472 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 SPC24Q8NBT2 197 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 SENP6Q9GZR1 1112 aaPredicted RBP13.28□□□□□ -0.28
HERC1-205ENST00000559886 PDZD7Q9H5P4 517 aa13.28□□□□□ -0.28
HERC1-205ENST00000559886 ZNF233A6NK53 670 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 OGTO15294 1046 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 CAND2O75155 1236 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 THPOP40225 353 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 GJA8P48165 433 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 ENPEPQ07075 957 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 CYP24A1Q07973 514 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 ZNF568Q3ZCX4 644 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 DCAF17Q5H9S7 520 aaPredicted RBP13.27□□□□□ -0.29
HERC1-205ENST00000559886 FKBP15Q5T1M5 1219 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 TCERG1LQ5VWI1 586 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 SPECC1LQ69YQ0 1117 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 TMC6Q7Z403 805 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 ZBTB33Q86T24 672 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 CPB2Q96IY4 423 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 ERGIC2Q96RQ1 377 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 ANK1P16157 1881 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 AFPP02771 609 aaKnown RBP13.27□□□□□ -0.29
HERC1-205ENST00000559886 HOXA11P31270 313 aaPredicted RBP13.27□□□□□ -0.29
HERC1-205ENST00000559886 ACOT2P49753 483 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 VAMP7P51809 220 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 NCBP1Q09161 790 aaKnown RBP13.27□□□□□ -0.29
HERC1-205ENST00000559886 CDR2LQ86X02 465 aaPredicted RBP13.27□□□□□ -0.29
HERC1-205ENST00000559886 CDT1Q9H211 546 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 PRDM10Q9NQV6 1147 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 AGPAT5Q9NUQ2 364 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 IMPACTQ9P2X3 320 aa13.27□□□□□ -0.29
HERC1-205ENST00000559886 ITIH6Q6UXX5 1313 aa13.26□□□□□ -0.29
HERC1-205ENST00000559886 CTSHP09668 335 aa13.26□□□□□ -0.29
HERC1-205ENST00000559886 MCF2P10911 925 aa13.26□□□□□ -0.29
HERC1-205ENST00000559886 HARSP12081 509 aaKnown RBP13.26□□□□□ -0.29
HERC1-205ENST00000559886 AXLP30530 894 aa13.26□□□□□ -0.29
HERC1-205ENST00000559886 FAM26DQ5JW98 314 aa13.26□□□□□ -0.29
HERC1-205ENST00000559886 ZBTB41Q5SVQ8 909 aa13.26□□□□□ -0.29
HERC1-205ENST00000559886 PLEKHO2Q8TD55 490 aa13.26□□□□□ -0.29
HERC1-205ENST00000559886 TMC2Q8TDI7 906 aa13.26□□□□□ -0.29
HERC1-205ENST00000559886 PARD3BQ8TEW8 1205 aa13.26□□□□□ -0.29
HERC1-205ENST00000559886 CITO14578 2027 aa13.26□□□□□ -0.29
HERC1-205ENST00000559886 DLG4P78352 724 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 C1orf220Q5T0J3 134 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 FAM228AQ86W67 206 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 FAM126BQ8IXS8 530 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 ANKLE1Q8NAG6 615 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 NOC2LQ9Y3T9 749 aaKnown RBP13.25□□□□□ -0.29
HERC1-205ENST00000559886 CD4P01730 458 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 TRIM49P0CI25 452 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 TRIM49CP0CI26 452 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 PSMD6Q15008 389 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 SYCP1Q15431 976 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 NOTUMQ6P988 496 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 USP37Q86T82 979 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 CCDC155Q8N6L0 562 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 ADPGKQ9BRR6 497 aa13.25□□□□□ -0.29
HERC1-205ENST00000559886 RBAKQ9NYW8 714 aaPredicted RBP13.25□□□□□ -0.29
HERC1-205ENST00000559886 CPSF3Q9UKF6 684 aaKnown RBP13.25□□□□□ -0.29
HERC1-205ENST00000559886 GOLGA6L6A8MZA4 724 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 COL6A1P12109 1028 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 CKBP12277 381 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 TNFSF9P41273 254 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 FMO5P49326 533 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 RBL2Q08999 1139 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 TBX2Q13207 712 aaPredicted RBP13.24□□□□□ -0.29
HERC1-205ENST00000559886 SEZ6Q53EL9 994 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 CCDC127Q96BQ5 260 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 SIK3Q9Y2K2 1263 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 MROH7Q68CQ1 1323 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 TRIP11Q15643 1979 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 GTPBP10A4D1E9 387 aaKnown RBP13.24□□□□□ -0.29
HERC1-205ENST00000559886 RPS6KA5O75582 802 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 CAPN2P17655 700 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 CLDN10P78369 228 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 PPP3CAQ08209 521 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 FBXO47Q5MNV8 452 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 ZNF618Q5T7W0 954 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 SLC27A1Q6PCB7 646 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 SLC39A5Q6ZMH5 540 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 APBB1IPQ7Z5R6 666 aaPredicted RBP13.24□□□□□ -0.29
HERC1-205ENST00000559886 BRSK2Q8IWQ3 736 aa13.24□□□□□ -0.29
HERC1-205ENST00000559886 THNSL1Q8IYQ7 743 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms