RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 POGKQ9P215 609 aa6.6□□□□□ -1.35
VPS13C-208ENST00000559119 EVLQ9UI08 416 aaPredicted RBP6.6□□□□□ -1.35
VPS13C-208ENST00000559119 TMPRSS11EQ9UL52 423 aa6.6□□□□□ -1.35
VPS13C-208ENST00000559119 CHST2Q9Y4C5 530 aa6.6□□□□□ -1.35
VPS13C-208ENST00000559119 ZMYM3Q14202 1370 aa6.59□□□□□ -1.35
VPS13C-208ENST00000559119 B5MCH6 92 aa6.59□□□□□ -1.35
VPS13C-208ENST00000559119 KDM1AO60341 852 aa6.59□□□□□ -1.35
VPS13C-208ENST00000559119 SPATA31D3P0C874 917 aa6.59□□□□□ -1.35
VPS13C-208ENST00000559119 MANFP55145 182 aaKnown RBP6.59□□□□□ -1.35
VPS13C-208ENST00000559119 MRPS21P82921 87 aaKnown RBP6.59□□□□□ -1.35
VPS13C-208ENST00000559119 MEF2AQ02078 507 aaPredicted RBP6.59□□□□□ -1.35
VPS13C-208ENST00000559119 CCDC62Q6P9F0 684 aa6.59□□□□□ -1.35
VPS13C-208ENST00000559119 DRICH1Q6PGQ1 229 aaPredicted RBP6.59□□□□□ -1.35
VPS13C-208ENST00000559119 SPATA31D4Q6ZUB0 917 aa6.59□□□□□ -1.35
VPS13C-208ENST00000559119 CMTR2Q8IYT2 770 aaKnown RBP6.59□□□□□ -1.35
VPS13C-208ENST00000559119 UBXN4Q92575 508 aa6.59□□□□□ -1.35
VPS13C-208ENST00000559119 KIAA0355O15063 1070 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 FKBP9O95302 570 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 HLA-DOAP06340 250 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 RBP3P10745 1247 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 ZSCAN20P17040 1043 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-208ENST00000559119 BMPR1AP36894 532 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 ADCYAP1R1P41586 468 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 GUCY1B3Q02153 619 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 SEPT7Q16181 437 aaKnown RBP6.58□□□□□ -1.36
VPS13C-208ENST00000559119 BEAN1Q3B7T3 259 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 C19orf54Q5BKX5 351 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 FKBP9P1Q75LS8 142 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 PDZD4Q76G19 769 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-208ENST00000559119 PRIMA1Q86XR5 153 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 ADGRG3Q86Y34 549 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 CPEB3Q8NE35 698 aaKnown RBP6.58□□□□□ -1.36
VPS13C-208ENST00000559119 CAVIN3Q969G5 261 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 ZNF764Q96H86 408 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-208ENST00000559119 DRC1Q96MC2 740 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 TARS2Q9BW92 718 aaKnown RBP6.58□□□□□ -1.36
VPS13C-208ENST00000559119 PIF1Q9H611 641 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 TNFRSF18Q9Y5U5 241 aa6.58□□□□□ -1.36
VPS13C-208ENST00000559119 TBKBP1A7MCY6 615 aa6.57□□□□□ -1.36
VPS13C-208ENST00000559119 ITGA10O75578 1167 aa6.57□□□□□ -1.36
VPS13C-208ENST00000559119 TRIM25Q14258 630 aaKnown RBP6.57□□□□□ -1.36
VPS13C-208ENST00000559119 DDB1Q16531 1140 aa6.57□□□□□ -1.36
VPS13C-208ENST00000559119 BROXQ5VW32 411 aa6.57□□□□□ -1.36
VPS13C-208ENST00000559119 ANKS6Q68DC2 871 aa6.57□□□□□ -1.36
VPS13C-208ENST00000559119 ABHD15Q6UXT9 468 aa6.57□□□□□ -1.36
VPS13C-208ENST00000559119 SYT12Q8IV01 421 aa6.57□□□□□ -1.36
VPS13C-208ENST00000559119 LYSMD2Q8IV50 215 aa6.57□□□□□ -1.36
VPS13C-208ENST00000559119 MDM1Q8TC05 714 aa6.57□□□□□ -1.36
VPS13C-208ENST00000559119 SNX33Q8WV41 574 aa6.57□□□□□ -1.36
VPS13C-208ENST00000559119 TFAP2CQ92754 450 aa6.57□□□□□ -1.36
VPS13C-208ENST00000559119 NOC2LQ9Y3T9 749 aaKnown RBP6.57□□□□□ -1.36
VPS13C-208ENST00000559119 MASP2O00187 686 aa6.56□□□□□ -1.36
VPS13C-208ENST00000559119 MXRA7P84157 204 aa6.56□□□□□ -1.36
VPS13C-208ENST00000559119 PDCD4Q53EL6 469 aaKnown RBP6.56□□□□□ -1.36
VPS13C-208ENST00000559119 SLC41A1Q8IVJ1 513 aa6.56□□□□□ -1.36
VPS13C-208ENST00000559119 RNF169Q8NCN4 708 aa6.56□□□□□ -1.36
VPS13C-208ENST00000559119 SLC5A5Q92911 643 aa6.56□□□□□ -1.36
VPS13C-208ENST00000559119 SYNPO2LQ9H987 977 aa6.56□□□□□ -1.36
VPS13C-208ENST00000559119 GPRC5DQ9NZD1 345 aa6.56□□□□□ -1.36
VPS13C-208ENST00000559119 PLAAQ9Y263 795 aa6.56□□□□□ -1.36
VPS13C-208ENST00000559119 CDY2AQ9Y6F7 541 aa6.56□□□□□ -1.36
VPS13C-208ENST00000559119 UNC119BA6NIH7 251 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 ZNF185O15231 689 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 GASTP01350 101 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 HKR1P10072 659 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 LMO1P25800 156 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 DDX6P26196 483 aaKnown RBP eCLIP6.55□□□□□ -1.36
VPS13C-208ENST00000559119 CSRP2Q16527 193 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 BMT2Q1RMZ1 405 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 SYCE2Q6PIF2 218 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 BTNL9Q6UXG8 535 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 ZFP28Q8NHY6 868 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 PAWRQ96IZ0 340 aaKnown RBP6.55□□□□□ -1.36
VPS13C-208ENST00000559119 COQ10AQ96MF6 247 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 TEX101Q9BY14 249 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 EMC7Q9NPA0 242 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 DKK2Q9UBU2 259 aa6.55□□□□□ -1.36
VPS13C-208ENST00000559119 USP15Q9Y4E8 981 aaPredicted RBP6.55□□□□□ -1.36
VPS13C-208ENST00000559119 TMEM127O75204 238 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 CDC45O75419 566 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 LPLP06858 475 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 CTSSP25774 331 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 CD38P28907 300 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 LGALS4P56470 323 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 ERCC6LQ2NKX8 1250 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 PITRM1Q5JRX3 1037 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 RASSF3Q86WH2 238 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 MFSD3Q96ES6 412 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 BBC3Q96PG8 261 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-208ENST00000559119 FEZ1Q99689 392 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 KCTD10Q9H3F6 313 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 SYBUQ9NX95 663 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 FPGT-TNNI3KV9GXZ4 949 aa6.54□□□□□ -1.36
VPS13C-208ENST00000559119 PIPSLA2A3N6 862 aa6.53□□□□□ -1.36
VPS13C-208ENST00000559119 CANXP27824 592 aaKnown RBP6.53□□□□□ -1.36
VPS13C-208ENST00000559119 BLOC1S1P78537 153 aa6.53□□□□□ -1.36
VPS13C-208ENST00000559119 CT83Q5H943 113 aa6.53□□□□□ -1.36
VPS13C-208ENST00000559119 ZNF480Q8WV37 535 aa6.53□□□□□ -1.36
VPS13C-208ENST00000559119 LINC00476Q8WZB0 136 aa6.53□□□□□ -1.36
VPS13C-208ENST00000559119 CEP95Q96GE4 821 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms