RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 TAF1LQ8IZX4 1826 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 F5H6K3 240 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 CHRM1P11229 460 aaPredicted RBP12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 CCND1P24385 295 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 PRELPP51888 382 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 ICA1Q05084 483 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 NFIAQ12857 509 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 MKRN3Q13064 507 aaKnown RBP12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 PPP2R5CQ13362 524 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 HHIPL2Q6UWX4 724 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 VSTM1Q6UX27 236 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 CKAP2Q8WWK9 683 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 SLCO2A1Q92959 643 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 TEKT1Q969V4 418 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 NUP85Q9BW27 656 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 CHORDC1Q9UHD1 332 aaPredicted RBP12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 PSMD10O75832 226 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 GJB6O95452 261 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 ITIH2P19823 946 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 ANKRD42Q8N9B4 389 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 BANK1Q8NDB2 785 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 THOC1Q96FV9 657 aaKnown RBP12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 PCDHB18PQ96TA0 734 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 RXFP1Q9HBX9 757 aa12.67□□□□□ -0.38
VIPAS39-211ENST00000557658 SPATA31A6Q5VVP1 1343 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 FAM196BA6NMK8 535 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 PIK3CDO00329 1044 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 ATMINO43313 823 aaPredicted RBP12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 SGPL1O95470 568 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 CHRNB2P17787 502 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 VAMP7P51809 220 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 DLG4P78352 724 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 KRT17Q04695 432 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 SHROOM1Q2M3G4 852 aaPredicted RBP12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 EPC2Q52LR7 807 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 GMCL1P1Q8NEA9 526 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 SLC5A5Q92911 643 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 GMCL1Q96IK5 515 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 WDR18Q9BV38 432 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 AAASQ9NRG9 546 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 ASIC3Q9UHC3 531 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 LOXHD1Q8IVV2 1947 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 GAS7O60861 476 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 NDUFB10O96000 172 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 CYP1A2P05177 515 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 DLATP10515 647 aaKnown RBP12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 CREB1P16220 341 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 TAL1P17542 331 aaPredicted RBP12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 HOXA10P31260 410 aaPredicted RBP12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 PPP3CAQ08209 521 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 SGO2Q562F6 1265 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 APOBEC3HQ6NTF7 200 aaKnown RBP12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 SLC30A10Q6XR72 485 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 SIAH1Q8IUQ4 282 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 ZFPM1Q8IX07 1006 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 EPS8L1Q8TE68 723 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 ZNF653Q96CK0 615 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 STRA6Q9BX79 667 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 ARHGEF3Q9NR81 526 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 UVRAGQ9P2Y5 699 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 GTF3C4Q9UKN8 822 aa12.66□□□□□ -0.38
VIPAS39-211ENST00000557658 ADAMTSL1Q8N6G6 1762 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 ARHGEF35A5YM69 484 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 K7ENM7 598 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 FSCN2O14926 492 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 HIP1RO75146 1068 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 TTC4O95801 387 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 BMP3P12645 472 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 BRAFP15056 766 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 GCLMP48507 274 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 LACTBP83111 547 aaPredicted RBP12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 RHBDF2Q6PJF5 856 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 TMEM179Q6ZVK1 233 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 SYDE1Q6ZW31 735 aaPredicted RBP12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 NOP9Q86U38 636 aaKnown RBP12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 SNF8Q96H20 258 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 BTBD6Q96KE9 485 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 CRAMP1Q96RY5 1269 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 POP1Q99575 1024 aaKnown RBP12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 TRIM7Q9C029 511 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 PCIF1Q9H4Z3 704 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 TMEM206Q9H813 350 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 NOCTQ9UK39 431 aaKnown RBP12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 BCS1LQ9Y276 419 aa12.65□□□□□ -0.38
VIPAS39-211ENST00000557658 CLDN3O15551 220 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 SERPINB2P05120 415 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 KRT16P08779 473 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 STX2P32856 288 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 MAN1A1P33908 653 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 MSH2P43246 934 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 CAV1Q03135 178 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 FAM196AQ6ZSG2 479 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 ARHGEF18Q6ZSZ5 1173 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 CPNE8Q86YQ8 564 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 FAM71AQ8IYT1 594 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 KIF2BQ8N4N8 673 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 GDAP1Q8TB36 358 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 MAIP1Q8WWC4 291 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 C1orf54Q8WWF1 131 aa12.65□□□□□ -0.39
VIPAS39-211ENST00000557658 TGS1Q96RS0 853 aaKnown RBP12.65□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms