RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 COLEC11Q9BWP8 271 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 NXF3Q9H4D5 531 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 TUFT1Q9NNX1 390 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 DPP7Q9UHL4 492 aa12.28□□□□□ -0.44
CCDC88C-213ENST00000557455 A0A1B0GUA9 196 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 TEX28O15482 410 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 MED24O75448 989 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 PDGFBP01127 241 aaPredicted RBP12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 ADH1AP07327 375 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 ST3GAL1Q11201 340 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 TCF15Q12870 199 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 ELMSAN1Q6PJG2 1045 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 C15orf39Q6ZRI6 1047 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 CCDC83Q8IWF9 413 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 ZBTB8OSQ8IWT0 167 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 RNF168Q8IYW5 571 aaPredicted RBP12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 MCPH1Q8NEM0 835 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 ERMNQ8TAM6 284 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 FEZF2Q8TBJ5 459 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 C8orf76Q96K31 380 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 PRIMPOLQ96LW4 560 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 NACC1Q96RE7 527 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 SMOC2Q9H3U7 446 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 GPRC5CQ9NQ84 441 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 MAN1C1Q9NR34 630 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 PARP2Q9UGN5 583 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 LIMCH1Q9UPQ0 1083 aa12.27□□□□□ -0.45
CCDC88C-213ENST00000557455 F8W810 466 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 SEC24BO95487 1268 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 GLUD1P00367 558 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 DSG1Q02413 1049 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 GRIK3Q13003 919 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 ZNF174Q15697 407 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 KIAA0319Q5VV43 1072 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 OTOP3Q7RTS5 596 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 GSTCDQ8NEC7 633 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 PHOX2BQ99453 314 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 POLR3CQ9BUI4 534 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 IRF2BPLQ9H1B7 796 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 RXFP1Q9HBX9 757 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 PRMT7Q9NVM4 692 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 KLK14Q9P0G3 267 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 ZMYM2Q9UBW7 1377 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 USP34Q70CQ2 3546 aa12.26□□□□□ -0.45
CCDC88C-213ENST00000557455 CCDC195A0A1B0GUA6 201 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 EFEMP2O95967 443 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 OR52Z1P0C646 297 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 RPA1P27694 616 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 NUBP1P53384 320 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 ORC2Q13416 577 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 GNL2Q13823 731 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 FAM187BQ17R55 369 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 TMEM132AQ24JP5 1023 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 USP41Q3LFD5 358 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 CDCA2Q69YH5 1023 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 FUT10Q6P4F1 479 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 POTEGQ6S5H5 508 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 PPP4R3CPQ6ZMV5 832 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 CMASQ8NFW8 434 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 B3GALT6Q96L58 329 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 LLPHQ9BRT6 129 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 GPR62Q9BZJ7 368 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 C2orf40Q9H1Z8 148 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 FOXP1Q9H334 677 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 FZD8Q9H461 694 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 CHST7Q9NS84 486 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 ADAM28Q9UKQ2 775 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 TRIP11Q15643 1979 aa12.25□□□□□ -0.45
CCDC88C-213ENST00000557455 ARHGEF35A5YM69 484 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 N4BP3O15049 544 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 TADA2AO75478 443 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 SPATA31D3P0C874 917 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 MYBP10242 640 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 RBM25P49756 843 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 PRPF4BQ13523 1007 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 MAPK6Q16659 721 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 TTC38Q5R3I4 469 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 HAUS3Q68CZ6 603 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 PADI6Q6TGC4 694 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 CYP26C1Q6V0L0 522 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 SPATA31D4Q6ZUB0 917 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 PALB2Q86YC2 1186 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 FAM184AQ8NB25 1140 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 HDAC7Q8WUI4 952 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 RABGGTAQ92696 567 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 STAMQ92783 540 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 ADPGKQ9BRR6 497 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 MFSD1Q9H3U5 465 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 SNTG2Q9NY99 539 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 MYO15AQ9UKN7 3530 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 DMDP11532 3685 aa12.24□□□□□ -0.45
CCDC88C-213ENST00000557455 TGM5O43548 720 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 RFPL2O75678 378 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 C1RP00736 705 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 PRKCBP05771 671 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 LIG1P18858 919 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 CYP11B2P19099 503 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 MUTP22033 750 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 GBP2P32456 591 aaPredicted RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms