RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 MARCKSL1P49006 195 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 COPS2P61201 443 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 NCALDP61601 193 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 RHBDF2Q6PJF5 856 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 RNF207Q6ZRF8 634 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 ZDHHC14Q8IZN3 488 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 BBOF1Q8ND07 529 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 CYP2W1Q8TAV3 490 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 EPS8L1Q8TE68 723 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 TCP11Q8WWU5 503 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 ANKRD27Q96NW4 1050 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 ACCSQ96QU6 501 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 IWS1Q96ST2 819 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 WDR18Q9BV38 432 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 CDC42EP4Q9H3Q1 356 aaKnown RBP17.45■□□□□ 0.38
SHMT2-231ENST00000557433 NOCTQ9UK39 431 aaKnown RBP17.45■□□□□ 0.38
SHMT2-231ENST00000557433 LTBP4Q8N2S1 1624 aa17.45■□□□□ 0.38
SHMT2-231ENST00000557433 TMEM110-MUSTN1A8MSY1 372 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 UBAP1LF5GYI3 381 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 CLTAP09496 248 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 CRKP46108 304 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 MFAP3P55082 362 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 FKBP1AP62942 108 aaKnown RBP17.44■□□□□ 0.38
SHMT2-231ENST00000557433 CCDC15Q0P6D6 951 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 NFIAQ12857 509 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 RRP1BQ14684 758 aaKnown RBP17.44■□□□□ 0.38
SHMT2-231ENST00000557433 E2F5Q15329 346 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 AADACL2Q6P093 401 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 SLC17A8Q8NDX2 589 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 SNF8Q96H20 258 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 CCDC113Q9H0I3 377 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 RXFP1Q9HBX9 757 aa17.44■□□□□ 0.38
SHMT2-231ENST00000557433 NOP53Q9NZM5 478 aaKnown RBP17.44■□□□□ 0.38
SHMT2-231ENST00000557433 TMEM120BA0PK00 339 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 UBOX5O94941 541 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 TTC4O95801 387 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 HOXA13P31271 388 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-231ENST00000557433 SLCO1A2P46721 670 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 IFNAR2P48551 515 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 CLNS1AP54105 237 aaKnown RBP17.43■□□□□ 0.38
SHMT2-231ENST00000557433 MAP2K1Q02750 393 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-231ENST00000557433 PTK6Q13882 451 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 ABCB5Q2M3G0 1257 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 FAM133BQ5BKY9 247 aaKnown RBP17.43■□□□□ 0.38
SHMT2-231ENST00000557433 ARHGEF18Q6ZSZ5 1173 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 SPATA21Q7Z572 469 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 TBC1D1Q86TI0 1168 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-231ENST00000557433 PNMA8AQ86V59 439 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-231ENST00000557433 ARHGEF19Q8IW93 802 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 FAM81BQ96LP2 452 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 NUP85Q9BW27 656 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 TEKT3Q9BXF9 490 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 FOXP3Q9BZS1 431 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 TRIM7Q9C029 511 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 ST6GALNAC4Q9H4F1 302 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 ECT2Q9H8V3 914 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 ABCF3Q9NUQ8 709 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 LGALS13Q9UHV8 139 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 DBR1Q9UK59 544 aaKnown RBP17.43■□□□□ 0.38
SHMT2-231ENST00000557433 SIPA1L1O43166 1804 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 HIP1RO75146 1068 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 GAS8O95995 478 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 POLR2MP0CAP2 368 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 GYS1P13807 737 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 CHRNB2P17787 502 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 SCNN1DP51172 638 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 ACVR2BQ13705 512 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 RASA3Q14644 834 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 CEP55Q53EZ4 464 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 RNF43Q68DV7 783 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 B3GNT9Q6UX72 402 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 PPP1R21Q6ZMI0 780 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 RELL1Q8IUW5 271 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 RIBC1Q8N443 379 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-231ENST00000557433 XXYLT1Q8NBI6 393 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 C7orf43Q8WVR3 580 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 KIFAP3Q92845 792 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 RIT2Q99578 217 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 TIPINQ9BVW5 301 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 IKZF4Q9H2S9 585 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 C15orf41Q9Y2V0 281 aa17.43■□□□□ 0.38
SHMT2-231ENST00000557433 TCP11X1B4DZS4 312 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 K7ENM7 598 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 RIMBP2O15034 1052 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 WFS1O76024 890 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 MXI1P50539 228 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 SGO2Q562F6 1265 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 VSTM1Q6UX27 236 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 KSR1Q8IVT5 923 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 PSPC1Q8WXF1 523 aaKnown RBP17.42■□□□□ 0.38
SHMT2-231ENST00000557433 SHC3Q92529 594 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 L3MBTL3Q96JM7 780 aaPredicted RBP17.42■□□□□ 0.38
SHMT2-231ENST00000557433 MAGEB18Q96M61 343 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 PCDHB18PQ96TA0 734 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 CCDC77Q9BR77 488 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 ARHGEF3Q9NR81 526 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 PRKAG3Q9UGI9 489 aa17.42■□□□□ 0.38
SHMT2-231ENST00000557433 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.41■□□□□ 0.38
SHMT2-231ENST00000557433 SORBS3O60504 671 aa17.41■□□□□ 0.38
SHMT2-231ENST00000557433 PDE6BP35913 854 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms