RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 GJB2P29033 226 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 HOXA11P31270 313 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 ERVFC1P60507 584 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 SMAD4Q13485 552 aaKnown RBP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 CLUL1Q15846 466 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 MAPK6Q16659 721 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 PLPP4Q5VZY2 271 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 LARP1BQ659C4 914 aaKnown RBP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 PHLDB3Q6NSJ2 640 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 APBB1IPQ7Z5R6 666 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 MRPL10Q7Z7H8 261 aaKnown RBP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 DEPTORQ8TB45 409 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 PRIMPOLQ96LW4 560 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 ADPGKQ9BRR6 497 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 CSRNP2Q9H175 543 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 POLR3FQ9H1D9 316 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 MINDY3Q9H8M7 445 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 TBC1D13Q9NVG8 400 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 PRMT7Q9NVM4 692 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 KCNG1Q9UIX4 513 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 KIAA1024Q9UPX6 916 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 A0A087WWV3 80 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 NT5C1B-RDH14C9J2C7 533 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 MED24O75448 989 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 OFD1O75665 1012 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 IL9P15248 144 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 HOXB8P17481 243 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 ATF7P17544 494 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 CYP11B2P19099 503 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 NCLP19338 710 aaKnown RBP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 PDCP20941 246 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 GLRA2P23416 452 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 GTF2F1P35269 517 aaKnown RBP eCLIP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 LTBRP36941 435 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 PBX3P40426 434 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 PRPHP41219 470 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 EFNA5P52803 228 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 CAPSQ13938 189 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 SMAD2Q15796 467 aaKnown RBP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 SLC27A1Q6PCB7 646 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 POTEGQ6S5H5 508 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 ADHFE1Q8IWW8 467 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 VPS52Q8N1B4 723 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 SLC39A11Q8N1S5 342 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 MRPL43Q8N983 215 aaKnown RBP8.1□□□□□ -1.11
SCFD1-222ENST00000556768 SNX29Q8TEQ0 813 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 STK32AQ8WU08 396 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 KIFAP3Q92845 792 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 CDK5RAP3Q96JB5 506 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 TBC1D32Q96NH3 1257 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 BHMT2Q9H2M3 363 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 XPNPEP1Q9NQW7 623 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 KIAA1468Q9P260 1216 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 HCSTQ9UBK5 93 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 FAN1Q9Y2M0 1017 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 PCDHB6Q9Y5E3 794 aa8.1□□□□□ -1.11
SCFD1-222ENST00000556768 A0A1B0GUA9 196 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 TSPAN1O60635 241 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 EYA4O95677 639 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 POMCP01189 267 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 GALTP07902 379 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 MBTD1Q05BQ5 628 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 DLX2Q07687 328 aaPredicted RBP8.09□□□□□ -1.11
SCFD1-222ENST00000556768 COASYQ13057 564 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 PRPF4BQ13523 1007 aaKnown RBP8.09□□□□□ -1.11
SCFD1-222ENST00000556768 ZRSR1Q15695 479 aaKnown RBP8.09□□□□□ -1.11
SCFD1-222ENST00000556768 DUSP6Q16828 381 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 CES5AQ6NT32 575 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 ELMSAN1Q6PJG2 1045 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 AGMOQ6ZNB7 445 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 ADGRD2Q7Z7M1 963 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 DDX53Q86TM3 631 aaKnown RBP8.09□□□□□ -1.11
SCFD1-222ENST00000556768 IGSF22Q8N9C0 903 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 CASP10Q92851 521 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 IGSF21Q96ID5 467 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 CPB2Q96IY4 423 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 TMEM175Q9BSA9 504 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 EMILIN2Q9BXX0 1053 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 DDX19AQ9NUU7 478 aaKnown RBP8.09□□□□□ -1.11
SCFD1-222ENST00000556768 RNF19AQ9NV58 838 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 DPP7Q9UHL4 492 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 SSX2IPQ9Y2D8 614 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 GIT1Q9Y2X7 761 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 IPPQ9Y573 584 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 PHLPP2Q6ZVD8 1323 aa8.09□□□□□ -1.11
SCFD1-222ENST00000556768 GBF1Q92538 1859 aa8.09□□□□□ -1.12
SCFD1-222ENST00000556768 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.08□□□□□ -1.12
SCFD1-222ENST00000556768 ARL5CA6NH57 179 aa8.08□□□□□ -1.12
SCFD1-222ENST00000556768 LINC01565O15544 149 aa8.08□□□□□ -1.12
SCFD1-222ENST00000556768 MBTPS2O43462 519 aa8.08□□□□□ -1.12
SCFD1-222ENST00000556768 TBX10O75333 385 aa8.08□□□□□ -1.12
SCFD1-222ENST00000556768 BMP15O95972 392 aa8.08□□□□□ -1.12
SCFD1-222ENST00000556768 ARF4P18085 180 aaPredicted RBP8.08□□□□□ -1.12
SCFD1-222ENST00000556768 LIG1P18858 919 aa8.08□□□□□ -1.12
SCFD1-222ENST00000556768 NAMPTP43490 491 aa8.08□□□□□ -1.12
SCFD1-222ENST00000556768 NR1H3Q13133 447 aa8.08□□□□□ -1.12
SCFD1-222ENST00000556768 TMEM31Q5JXX7 168 aa8.08□□□□□ -1.12
SCFD1-222ENST00000556768 ARL6IP4Q66PJ3 421 aaKnown RBP8.08□□□□□ -1.12
SCFD1-222ENST00000556768 KIAA1841Q6NSI8 718 aa8.08□□□□□ -1.12
SCFD1-222ENST00000556768 PPFIBP1Q86W92 1011 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms