RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 HES2Q9Y543 173 aa14.11□□□□□ -0.15
SHMT2-223ENST00000556689 DENND4AQ7Z401 1863 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 WDR81Q562E7 1941 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 F8W810 466 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 TSPAN1O60635 241 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 PTENP60484 403 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 PUM1Q14671 1186 aaKnown RBP eCLIP14.1□□□□□ -0.15
SHMT2-223ENST00000556689 EMC2Q15006 297 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 NPY5RQ15761 445 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 XKR9Q5GH70 373 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 PPP4R3AQ6IN85 833 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 GET4Q7L5D6 327 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-223ENST00000556689 GLYCTKQ8IVS8 523 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 HACE1Q8IYU2 909 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 RUBCNQ92622 972 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 SHDQ96IW2 340 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 CPB2Q96IY4 423 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 ZFP42Q96MM3 310 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 MTRQ99707 1265 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 APOL6Q9BWW8 343 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 GPR62Q9BZJ7 368 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 TRIM6Q9C030 488 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-223ENST00000556689 ZSWIM4Q9H7M6 989 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 RGL1Q9NZL6 768 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 ZFP37Q9Y6Q3 630 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-223ENST00000556689 NUMBLQ9Y6R0 609 aa14.1□□□□□ -0.15
SHMT2-223ENST00000556689 CCDC194A0A1B0GVG4 234 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 INO80B-WBP1J3KQ70 363 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 TADA2AO75478 443 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 GCFC2P16383 781 aaKnown RBP14.09□□□□□ -0.15
SHMT2-223ENST00000556689 FSHRP23945 695 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 STARD6P59095 220 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 CREMQ03060 361 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 POU5F1BQ06416 359 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 HTR4Q13639 388 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 TFDP1Q14186 410 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 FUT10Q6P4F1 479 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 CPLX2Q6PUV4 134 aaKnown RBP14.09□□□□□ -0.15
SHMT2-223ENST00000556689 POTEGQ6S5H5 508 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 PJA1Q8NG27 643 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 ZNF274Q96GC6 653 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-223ENST00000556689 B3GALT6Q96L58 329 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 LXNQ9BS40 222 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 ADAM28Q9UKQ2 775 aa14.09□□□□□ -0.15
SHMT2-223ENST00000556689 MED19A0JLT2 244 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-223ENST00000556689 ZBTB39O15060 712 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 TBX3O15119 743 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 CCNT1O60563 726 aaKnown RBP14.08□□□□□ -0.16
SHMT2-223ENST00000556689 ZMYND10O75800 440 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 RPL17P18621 184 aaKnown RBP14.08□□□□□ -0.16
SHMT2-223ENST00000556689 AKAP5P24588 427 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 GPC5P78333 572 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 CTTNQ14247 550 aaKnown RBP14.08□□□□□ -0.16
SHMT2-223ENST00000556689 NCAPH2Q6IBW4 605 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 RUFY3Q7L099 469 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 NEK8Q86SG6 692 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 IFNLR1Q8IU57 520 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-223ENST00000556689 TPH2Q8IWU9 490 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 GSTCDQ8NEC7 633 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 ST13P5Q8NFI4 369 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-223ENST00000556689 HAS1Q92839 578 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 BORCS6Q96GS4 357 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 DYDC2Q96IM9 177 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 AIFM3Q96NN9 605 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 NAP1L4Q99733 375 aaKnown RBP14.08□□□□□ -0.16
SHMT2-223ENST00000556689 RPP25Q9BUL9 199 aaKnown RBP14.08□□□□□ -0.16
SHMT2-223ENST00000556689 FOXQ1Q9C009 403 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 CDH7Q9ULB5 785 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 KCNJ14Q9UNX9 436 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 DMXL1Q9Y485 3027 aa14.08□□□□□ -0.16
SHMT2-223ENST00000556689 SLITRK3O94933 977 aa14.07□□□□□ -0.16
SHMT2-223ENST00000556689 BAG4O95429 457 aaKnown RBP14.07□□□□□ -0.16
SHMT2-223ENST00000556689 GLULP15104 373 aa14.07□□□□□ -0.16
SHMT2-223ENST00000556689 ARF4P18085 180 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-223ENST00000556689 TOB2Q14106 344 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-223ENST00000556689 PARM1Q6UWI2 310 aa14.07□□□□□ -0.16
SHMT2-223ENST00000556689 CENPQQ7L2Z9 268 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-223ENST00000556689 GRASPQ7Z6J2 395 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-223ENST00000556689 RABGGTAQ92696 567 aa14.07□□□□□ -0.16
SHMT2-223ENST00000556689 NXF3Q9H4D5 531 aaKnown RBP14.07□□□□□ -0.16
SHMT2-223ENST00000556689 KLK14Q9P0G3 267 aa14.07□□□□□ -0.16
SHMT2-223ENST00000556689 FRYLO94915 3013 aa14.07□□□□□ -0.16
SHMT2-223ENST00000556689 C2orf16Q68DN1 1984 aa14.07□□□□□ -0.16
SHMT2-223ENST00000556689 WDR87Q6ZQQ6 2873 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 KANSL1LA0AUZ9 987 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 KINO60870 393 aaKnown RBP14.06□□□□□ -0.16
SHMT2-223ENST00000556689 HNRNPA1P09651 372 aaKnown RBP eCLIP14.06□□□□□ -0.16
SHMT2-223ENST00000556689 ARL2P36404 184 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 CYP4A11Q02928 519 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 MBTD1Q05BQ5 628 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 GRIK3Q13003 919 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 SNW1Q13573 536 aaKnown RBP14.06□□□□□ -0.16
SHMT2-223ENST00000556689 AMHR2Q16671 573 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 SLC44A4Q53GD3 710 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 SLC27A1Q6PCB7 646 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 PRSS55Q6UWB4 352 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-223ENST00000556689 SLFN12Q8IYM2 578 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 MAML2Q8IZL2 1156 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-223ENST00000556689 DCLK2Q8N568 766 aa14.06□□□□□ -0.16
SHMT2-223ENST00000556689 FGF14Q92915 247 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms