RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 NRP1O14786 923 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 PER2O15055 1255 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 POMCP01189 267 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 EDN1P05305 212 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 SCP2P22307 547 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 SF3A1Q15459 793 aaKnown RBP17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 EP400NLQ6ZTU2 488 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 APBB1IPQ7Z5R6 666 aaPredicted RBP17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 CABP7Q86V35 215 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 SUSD6Q92537 303 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 CASP10Q92851 521 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 CDK5RAP3Q96JB5 506 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 ZFP42Q96MM3 310 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 MARCH5Q9NX47 278 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 TNFSF13BQ9Y275 285 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 FAN1Q9Y2M0 1017 aa17.68■□□□□ 0.42
CCDC88C-209ENST00000554872 C5orf42Q9H799 3197 aa17.67■□□□□ 0.42
CCDC88C-209ENST00000554872 TDRD15B5MCY1 1934 aaKnown RBP17.67■□□□□ 0.42
CCDC88C-209ENST00000554872 PDIA4P13667 645 aaKnown RBP17.67■□□□□ 0.42
CCDC88C-209ENST00000554872 UBA7P41226 1012 aa17.67■□□□□ 0.42
CCDC88C-209ENST00000554872 SCNN1GP51170 649 aa17.67■□□□□ 0.42
CCDC88C-209ENST00000554872 PTPAQ15257 358 aa17.67■□□□□ 0.42
CCDC88C-209ENST00000554872 GJD3Q8N144 294 aa17.67■□□□□ 0.42
CCDC88C-209ENST00000554872 KIFC3Q9BVG8 833 aa17.67■□□□□ 0.42
CCDC88C-209ENST00000554872 GBP3Q9H0R5 595 aa17.67■□□□□ 0.42
CCDC88C-209ENST00000554872 CD320Q9NPF0 282 aa17.67■□□□□ 0.42
CCDC88C-209ENST00000554872 ODF2LQ9ULJ1 636 aa17.67■□□□□ 0.42
CCDC88C-209ENST00000554872 BARX2Q9UMQ3 279 aaPredicted RBP17.67■□□□□ 0.42
CCDC88C-209ENST00000554872 K7ERI5 159 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 LILRB3O75022 631 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 NR1I2O75469 434 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 BRD1O95696 1058 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 C1RP00736 705 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 PLA2G4BP0C869 781 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 PLS3P13797 630 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 AKAP5P24588 427 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 PEX3P56589 373 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 PTPN14Q15678 1187 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 NT5DC1Q5TFE4 455 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 ATF7IP2Q5U623 682 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 ANKRD54Q6NXT1 300 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 CDR2LQ86X02 465 aaPredicted RBP17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 CALML4Q96GE6 196 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 HERC2P3Q9BVR0 1158 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 CCSER1Q9C0I3 900 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 ZSCAN16Q9H4T2 348 aaPredicted RBP17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 PTPRHQ9HD43 1115 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 KMT5AQ9NQR1 393 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 MIOSQ9NXC5 875 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 MTMR6Q9Y217 621 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 SSX2IPQ9Y2D8 614 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 HCFC2Q9Y5Z7 792 aa17.66■□□□□ 0.42
CCDC88C-209ENST00000554872 CLASP2O75122 1294 aaKnown RBP17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 RECQL4O94761 1208 aa17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 CXCL14O95715 111 aa17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 SOD2P04179 222 aa17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 PROZP22891 400 aa17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 EEF1DP3Q658K8 133 aa17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 TAS1R3Q7RTX0 852 aa17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 PPFIBP1Q86W92 1011 aa17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 RPS6KC1Q96S38 1066 aa17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 ACO2Q99798 780 aaKnown RBP17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 MRPL4Q9BYD3 311 aaKnown RBP17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 S1PR5Q9H228 398 aa17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 DZANK1Q9NVP4 752 aa17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 USP15Q9Y4E8 981 aaPredicted RBP17.65■□□□□ 0.42
CCDC88C-209ENST00000554872 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 CCDC169A6NNP5 214 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 PI4K2BG5E9Z4 385 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 H0YCG3 227 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 PTGESO14684 152 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 STX6O43752 255 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 ZNF131P52739 623 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 TUSC3Q13454 348 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 NAB2Q15742 525 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 CLUL1Q15846 466 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 TMEM132AQ24JP5 1023 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 TPRNQ4KMQ1 711 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 ARSHQ5FYA8 562 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 SYCE2Q6PIF2 218 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 TMEM161BQ8NDZ6 487 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 SLC22A17Q8WUG5 538 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 COLEC11Q9BWP8 271 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 APOL6Q9BWW8 343 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 C1QTNF1Q9BXJ1 281 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 CHST7Q9NS84 486 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 BLOC1S4Q9NUP1 217 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 SNTG2Q9NY99 539 aa17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 LARSQ9P2J5 1176 aaKnown RBP17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 FBXO2Q9UK22 296 aaPredicted RBP17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 SRPRBQ9Y5M8 271 aaKnown RBP17.64■□□□□ 0.41
CCDC88C-209ENST00000554872 ABLIM1O14639 778 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 GRM5P41594 1212 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 OR1G1P47890 313 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 SMTNP53814 917 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 RBM10P98175 930 aaKnown RBP17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 GRIN1Q05586 938 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 ITIH3Q06033 890 aa17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 CBX2Q14781 532 aaPredicted RBP17.63■□□□□ 0.41
CCDC88C-209ENST00000554872 ZRSR1Q15695 479 aaKnown RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms