RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 SNRPFP62306 86 aaKnown RBP13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 PTPROQ16827 1216 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 FAM110CQ1W6H9 321 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 KIAA0753Q2KHM9 967 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 TEX35Q5T0J7 233 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 PLEKHH3Q7Z736 793 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 CAPZA3Q96KX2 299 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 AGO2Q9UKV8 859 aaKnown RBP13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 ADCY3O60266 1144 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 NAP1L1P55209 391 aaKnown RBP13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 GLYCTKQ8IVS8 523 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 SLC20A1Q8WUM9 679 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 FAM167AQ96KS9 214 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 GOLPH3Q9H4A6 298 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 SMARCAD1Q9H4L7 1026 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 FLRT1Q9NZU1 646 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 ZSWIM8A7E2V4 1837 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 STRNO43815 780 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 GARTP22102 1010 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 USP8P40818 1118 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 TNFSF9P41273 254 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 PRKCIP41743 596 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 EFCAB12Q6NXP0 572 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 SV2AQ7L0J3 742 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 PPM1KQ8N3J5 372 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 DHX38Q92620 1227 aaKnown RBP13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 TATDN2Q93075 761 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 KREMEN1Q96MU8 473 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 SUCLA2Q9P2R7 463 aaPredicted RBP13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 NAGPAQ9UK23 515 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 MYO6Q9UM54 1294 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 HTTP42858 3142 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 MAPK13O15264 365 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 PJA2O43164 708 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 B4GALT5O43286 388 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 INSRRP14616 1297 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 DNA2P51530 1060 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 GRM1Q13255 1194 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 CHADLQ6NUI6 762 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 U2AF1L4Q8WU68 220 aaKnown RBP13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 ZIC5Q96T25 663 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 MSTO1Q9BUK6 570 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 TSGA10Q9BZW7 698 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 MINDY3Q9H8M7 445 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 VTA1Q9NP79 307 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 TMEM51Q9NW97 253 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 TAS2R14Q9NYV8 317 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 GH1P01241 217 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 TAF1CQ15572 869 aaPredicted RBP13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 CCL14Q16627 93 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 KRT39Q6A163 491 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 ALKBH5Q6P6C2 394 aaKnown RBP13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 TRAPPC11Q7Z392 1133 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 TMEM130Q8N3G9 435 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 PSPC1Q8WXF1 523 aaKnown RBP13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 TINF2Q9BSI4 451 aa13.8□□□□□ -0.2
VIPAS39-206ENST00000553888 IGKV6-21A0A0C4DH24 114 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 ZNF233A6NK53 670 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 EXTL3O43909 919 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 MSCO60682 206 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 FERP16591 822 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 CXCR5P32302 372 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 SAPCD2Q86UD0 394 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 ABRAQ8N0Z2 381 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 TMEM8AQ9HCN3 771 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 SEPT11Q9NVA2 429 aaKnown RBP13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 SMARCAL1Q9NZC9 954 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 PACSIN2Q9UNF0 486 aaPredicted RBP13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 TRIP12Q14669 1992 aaPredicted RBP13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 IQCF3P0C7M6 154 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 LAMC2Q13753 1193 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 IER5Q5VY09 327 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 SPOPLQ6IQ16 392 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 FBXO38Q6PIJ6 1188 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 UBXN4Q92575 508 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 CCDC113Q9H0I3 377 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 ERAP1Q9NZ08 941 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 EHD2Q9NZN4 543 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 STYXL1Q9Y6J8 313 aa13.79□□□□□ -0.2
VIPAS39-206ENST00000553888 H0YCG3 227 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 N4BP1O75113 896 aaKnown RBP13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 C22orf31O95567 290 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 FTCDO95954 541 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 ANK1P16157 1881 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 ZSCAN20P17040 1043 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 TNNI1P19237 187 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 CETN1Q12798 172 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 ACVR2BQ13705 512 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 NFRKBQ6P4R8 1299 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 C16orf70Q9BSU1 422 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 RBAKQ9NYW8 714 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 ADGRA2Q96PE1 1338 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 A0A0B4J269 797 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 RBM47A0AV96 593 aaKnown RBP13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 HBP1O60381 514 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 TACC1O75410 805 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 SGPL1O95470 568 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 VTNP04004 478 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 OSTNP61366 133 aa13.78□□□□□ -0.2
VIPAS39-206ENST00000553888 TAF3Q5VWG9 929 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms