RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 RIT2Q99578 217 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 EHMT1Q9H9B1 1298 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 RAVER2Q9HCJ3 691 aaKnown RBP13.17□□□□□ -0.3
SHMT2-207ENST00000553837 HOMER2Q9NSB8 354 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 SEL1LQ9UBV2 794 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 EME2A4GXA9 379 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-207ENST00000553837 BHMG1C9JSJ3 638 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-207ENST00000553837 F8VZ95 297 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 PPFIA2O75334 1257 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 SMNDC1O75940 238 aaKnown RBP eCLIP13.17□□□□□ -0.36e-6■□□□□ 8.8
SHMT2-207ENST00000553837 ASNSP08243 561 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 ALADP13716 330 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 MAGEA8P43361 318 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 DLG4P78352 724 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 RASA3Q14644 834 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 RPS6KA1Q15418 735 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 TKFCQ3LXA3 575 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 AGBL3Q8NEM8 1001 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 TPCN2Q8NHX9 752 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 SLC30A5Q8TAD4 765 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 U2AF1L4Q8WU68 220 aaKnown RBP13.17□□□□□ -0.3
SHMT2-207ENST00000553837 TLCD1Q96CP7 247 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 SYT11Q9BT88 431 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 MKNK1Q9BUB5 465 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 MOV10L1Q9BXT6 1211 aaKnown RBP13.17□□□□□ -0.3
SHMT2-207ENST00000553837 CHCHD3Q9NX63 227 aaKnown RBP13.17□□□□□ -0.3
SHMT2-207ENST00000553837 SAMD15Q9P1V8 674 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 DNAJC12Q9UKB3 198 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 L3MBTL1Q9Y468 752 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 ZHX2Q9Y6X8 837 aa13.17□□□□□ -0.3
SHMT2-207ENST00000553837 GOLGA6L10A0A0M3HER8 536 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 AP1G2O75843 785 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 KIF4AO95239 1232 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 ALAS1P13196 640 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 RAB27AP51159 221 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 DRAP1Q14919 205 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-207ENST00000553837 UGCGQ16739 394 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 SPDYCQ5MJ68 293 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 C10orf76Q5T2E6 689 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 MIER3Q7Z3K6 550 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 NIM1KQ8IY84 436 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 LMO3Q8TAP4 145 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 ACTRT1Q8TDG2 376 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 ZNF317Q96PQ6 595 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-207ENST00000553837 TAAR1Q96RJ0 339 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 INTS2Q9H0H0 1204 aaKnown RBP13.16□□□□□ -0.3
SHMT2-207ENST00000553837 PCIF1Q9H4Z3 704 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 AGO4Q9HCK5 861 aaKnown RBP13.16□□□□□ -0.3
SHMT2-207ENST00000553837 UBIAD1Q9Y5Z9 338 aa13.16□□□□□ -0.3
SHMT2-207ENST00000553837 ASTN2O75129 1339 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-207ENST00000553837 DCDC2CA8MYV0 355 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 KCNK3O14649 394 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 MAFGO15525 162 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 SART1O43290 800 aaKnown RBP13.15□□□□□ -0.3
SHMT2-207ENST00000553837 UBE4BO95155 1302 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 LUC7L3O95232 432 aaKnown RBP13.15□□□□□ -0.3
SHMT2-207ENST00000553837 BCRP11274 1271 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 SOX5P35711 763 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 PEX19P40855 299 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 UTRNP46939 3433 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 TBC1D25Q3MII6 688 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 PHLDB3Q6NSJ2 640 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 TRPM8Q7Z2W7 1104 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 DDX42Q86XP3 938 aaKnown RBP eCLIP13.15□□□□□ -0.3
SHMT2-207ENST00000553837 PALB2Q86YC2 1186 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 GLYCTKQ8IVS8 523 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 PROCA1Q8NCQ7 364 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-207ENST00000553837 SYTL5Q8TDW5 730 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-207ENST00000553837 AGAP11Q8TF27 550 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 MYOZ2Q9NPC6 264 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 KCND2Q9NZV8 630 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 IGSF9BQ9UPX0 1349 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 STXBP5LQ9Y2K9 1186 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 CCDC188H7C350 402 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 K7ENM7 598 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 ATP9AO75110 1047 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 FLOT1O75955 427 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 NQO1P15559 274 aaKnown RBP13.15□□□□□ -0.3
SHMT2-207ENST00000553837 STAT1P42224 750 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 GALCP54803 685 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 TBC1D10BQ4KMP7 808 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-207ENST00000553837 HS2ST1Q7LGA3 356 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 TMC3Q7Z5M5 1100 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 HOOK3Q86VS8 718 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 MDM1Q8TC05 714 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 PLEKHO2Q8TD55 490 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 PARD3BQ8TEW8 1205 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 WNK4Q96J92 1243 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 ZNF570Q96NI8 536 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 STK33Q9BYT3 514 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 NEUROG2Q9H2A3 272 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 TAS2R14Q9NYV8 317 aa13.15□□□□□ -0.3
SHMT2-207ENST00000553837 EXOC3O60645 756 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 DIAPH2O60879 1101 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 P4HBP07237 508 aaKnown RBP13.14□□□□□ -0.31
SHMT2-207ENST00000553837 H2AFZP0C0S5 128 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 FERP16591 822 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 EIF2AK2P19525 551 aaKnown RBP13.14□□□□□ -0.31
SHMT2-207ENST00000553837 BAG6P46379 1132 aa13.14□□□□□ -0.31
SHMT2-207ENST00000553837 RARRES1P49788 294 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms